Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1506 ATGTATCGATCAGTCCCACCTTTGACAGCCATCGATAGATTCTTGTGGGGCCAGCAGTCACAGAATCACAAGACTTCTACTGTGTCGCCCAACACTGAAAGATCGAGTTTCATCGATGGCTTTGAGCAGGCTTTGAACTGGACACGCACTCAAGTCCCACCATCGTGCTGCGGAAACAGAGTTCTGGGGAAGCATGATGGTGATGATACTGTGGGAAGGAGAATCAATAAGAAAGGGTCTCGTGTATCTTTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAATTGGTGAGGTTGGTGAATCAATATGGTGTGAAGAAATGGGCTGAAATAGCAGAGAAATTGGATGGAAGAGCTGGCAAGCAGTGTCGAGAGAGATGGCACAATCATTTGCGCCCTGATATTAAGAGAGAAAGTTGGAGTGAAGAAGAAGAGAGGATATTGGTGGAAACACATGCCAAGGTGGGGAATCGTTGGGCAGAAATAGCAAAGAACATTCCAGGAAGAACAGAGAATGCAATCAAGAACCACTGGAATGCCACTAAAAGGAGGCAGAATTCCAAGAGAAAGAAGAAAATCACACACAAAGCACACAAAAAGCCACGTTCCTCTGTACTTGAAGACTACATCAGAAGCAAGACCCTGATGAGTAACACTGTACAGCACATTGCAGAAAACCAGTCTGATGAACCCTCTTCTGAATTTGCTGTTGTTCATGGCAAATCTGCAATTGCTGAGCCATATGATGAGGAATTGCGCTTCCTGCAAGGTTTTTTAGCCGACAATCAGAATCAGAAACAGTCTCTTGCTGATGCTGACCTCTCTGAGAATTCTTCAACTTCCTACTTGTTGGACTTTTGTCAAACTGATGGTGGACAGCATCTTATCGCTGACGTGACAACTGGGCCTGGATTTGTGTTTCCCATATCAAACCCAGATGACAAAATGAGCTTCTACGAGAGTTTCCTTGCTGAGAAGGCTGCCACTCCCATTAAAGACACCCAATCAGATCTTTATCTCTCTCACCTGCTCAATGGACCAACTTCCTCATCACTTTTGTGCGGGTATGGGAATCAAAACCTGAAGGTGGACTTTCAAATGGGGTATCAAGATAGTTCAGGAGGAAAGCGAGAGATGGATTTGATGGAATTGGTTTCTTCTTCTAAATTCTCTACTAGCATCAACTGTAGCATATGA 1200 0.4442 MYRSVPPLTAIDRFLWGQQSQNHKTSTVSPNTERSSFIDGFEQALNWTRTQVPPSCCGNRVLGKHDGDDTVGRRINKKGSRVSLIKGQWTDEEDRKLVRLVNQYGVKKWAEIAEKLDGRAGKQCRERWHNHLRPDIKRESWSEEEERILVETHAKVGNRWAEIAKNIPGRTENAIKNHWNATKRRQNSKRKKKITHKAHKKPRSSVLEDYIRSKTLMSNTVQHIAENQSDEPSSEFAVVHGKSAIAEPYDEELRFLQGFLADNQNQKQSLADADLSENSSTSYLLDFCQTDGGQHLIADVTTGPGFVFPISNPDDKMSFYESFLAEKAATPIKDTQSDLYLSHLLNGPTSSSLLCGYGNQNLKVDFQMGYQDSSGGKREMDLMELVSSSKFSTSINCSI 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1506 399 MobiDBLite consensus disorder prediction 183 200 - -
Prci3g1506 399 Gene3D - 85 137 - -
Prci3g1506 399 Pfam Myb-like DNA-binding domain 89 146 - -
Prci3g1506 399 SMART sant 85 134 IPR001005 -
Prci3g1506 399 SMART sant 137 185 IPR001005 -
Prci3g1506 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 136 IPR017930 -
Prci3g1506 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 187 IPR017930 -
Prci3g1506 399 FunFam Transcriptional activator Myb isoform A 85 137 - -
Prci3g1506 399 SUPERFAMILY Homeodomain-like 83 179 IPR009057 -
Prci3g1506 399 ProSiteProfiles Myb-like domain profile. 81 132 IPR001005 -
Prci3g1506 399 ProSiteProfiles Myb-like domain profile. 133 183 IPR001005 -
Prci3g1506 399 Gene3D - 139 208 - -
Prci3g1506 399 CDD SANT 89 132 IPR001005 -
Prci3g1506 399 MobiDBLite consensus disorder prediction 183 204 - -
Prci3g1506 399 PANTHER MYB PROTEIN-RELATED 77 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1506 Prci-Chr3 24873163 24875257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1506 1 395 MYB Transcription Factor Family AT5G58850 39.381 1.01e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci3g1506 Myb_DNA-bind_6 5.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1506 K09422 - gmx:100786295 318.161