Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1362 ATGGCGTCATCCCAAGTTGAAATTGCTTTGACCTCCCCATTTGGTTGTATTCTGAGAAAATATAACAATAATCATCATCGCGAGAGATGCAACTCTGCAACTTGCCATTTCCAGAACAATGACAGAAGCTTCGTCGAAGATCATCATCACGTCGACAACATCAACAACATGAATGATCCTAAGAAGAACAGAAACGTAGGATTCACGAAGAAGGAAAAAGAAGAGGAATCCTTCTCCTCCTCGTCATCCAGCAGCAGCAGCAACCCTAATAAACAGTCACAGATTCTGGATCGATGGGCGGCAAGAAAGGCCAAAGAAATGGTATCCACAATCGAGACGGAAGCTGAGCTTCTGGAGAATCTGGGTTCTTCTGCGGCGAGGCTGCCAACAACTTCCGCATCAGAAACATCGAACCGTGGAGCTTCATCTCTGGTTCAAATATGGGAGAAGAGGCTGAATAACCGAAACCAGTCACTCAAGTACTATAACAACAACGGAAACAACCATAATATTCCCAGTACAACGAGCAGAACATCATCGATCGGCTCAGATATTACTGGAGAATTCACGGATAGTGAATCATCGTCATCGTATTCAGATTGGGTGGCGAATGTTACAAATGAGCCTACATGTTCGACCCCAAAGGTGGCAGACATTATCAAGAGATTGAAGGAGAAGAATAATAATAATAATGACAACCATGGGCAAGAACAAAGTAATAATACATCAAACAATAATAATAATAACATGATGATGGTGATGATGATGGGATCGTCATCGTCGTCTTCATCCTTGTCGAGATTGAAGGTGCGAGCTTGCAGAGAACAAGGAGAACATCATCACACGAGCGTGTTGCTTCACCAGGTCACGAGCTCTCCTCGGCTTCGAGGCCGTCGAGCATATACAGATTTGCTTATGCAGATGGAACGAGACAGACACGGAGAGCTCAATCATTTGGCTCAGCTTGCACCTGTTTCCAACTTTTCACAAAGAGGTCGAAGTCGTATTCAGTCACTCCTGCGGCTTAGATTATTAAAACGACATCATGAATCAACAATATATGAAGCGACTAGACAACCAAAAGGGTCCACAATTATGCACCTAAGGGAAAGATTTAACGTAGAAACAATGAAACAAGGAAGTACAAGGCAACCAGAAATAGCTAGTAGTTCAAGAAACACTAGTCCAAATCAGCCCCAAAACCCTTCTTCCCCTAATAACCCTAGGGATGATCACGGGTCGAACCGGGTGGTCGATGTGACAGATGGCTGCCAAACTGCTGATGATAATAATGCAAATGATCACTCGGTAGCATGTGCTCATAATAAACCAATGTCTCAAACAAATGAAGAACAAGAAGAAGCTCATGCAAATTCAGAAACTCAAAAAGTTGCTGCATTATCGGAAGAAGTTGGTGAGACAAGTACTTGCAACATGGTTGATTCAAATGCAAACCATGAGACGACAAAGGATAGTGAAGAAGATCTGGCAGAGGTAAAGCAGGATAATTATAGTGCAGAAACTGAAATCAGTTATGTAGATGAAACAATGAATATTGAAGAAGAGGGATATGCAAGTGAAGGCAATGATTTTGTTGATGATGAACATTATTATTATGATTGGATCAGTCCTATTTCTCGCCCTAGAAGCTATTGGGAAGATCGTAGACAAGCCTGGTATAGAGAGATGCTTGACACGGCTTCTTCTGATAAACGAGAGATACGTCAACTTCTTGAACGGAGAACAGTTTCAAGTTTCCTTTCAAGTGACATGAGAGAAAGAATGGATAAATTGATGGAATATCACGTAGGAACACAGACACATTTTATCAGTAGGCAAGACCAAGAAGATGATGAAGATGGTGGAGGTAGAATGGGCCATCAATTAATGTCATTTTTGCAACAACGCATTCAACGTCATGCAGGTCACAACAACCACAGAGAAGACGAACCAGAAGAAGGTGATGAAAAACAAGAGTACGTACAACAAGAACAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGAGAGCTTGAGTAACAATAACGGTGTTTACAATGAAACCAGTGATGATGGTAATCAATCATCATCATCAACACAAATTTTTAGTTCCCCTTCTCCCAACATGTCATCTTGGAGTTACAGAGACAACGAAGCCAGTGATGATTCTGACAGACTTGAATCTGCTACGTCTTCAACACAACCTTCTTATCGCCAATCCTCGTCTTCTATTAATCCTCATTCAATGGAAATGGATTTGATATATGACATGAGAGGCCAGATGAAGCAGCTGTACAGAGAGATGGCTGAGATAAGAAAATCGCTCAATAGCTGCATAGATATGCAGATGATGTTACAAAAATCAATGAAACGAGATATTAACTCAGCACTTAGAGAGAAGAAGAAGAAGAAGACGACCAATGAGCAGAAGCCACAGAAGAAAGGCAATTGTTGTATTTGCTACGACAAGAAAGTTGACTCACTTTTATACAGATGTGGGCACATGTGCACATGCATGAAGTGTGCGAATGAGTTGCAGTGGAATAGTGGAAAGTGTCCAATTTGTCGAGCTCCAATAGCAGATGTTGTCAAGGTTTATGTCGATGTCTAG 2613 0.416 MASSQVEIALTSPFGCILRKYNNNHHRERCNSATCHFQNNDRSFVEDHHHVDNINNMNDPKKNRNVGFTKKEKEEESFSSSSSSSSSNPNKQSQILDRWAARKAKEMVSTIETEAELLENLGSSAARLPTTSASETSNRGASSLVQIWEKRLNNRNQSLKYYNNNGNNHNIPSTTSRTSSIGSDITGEFTDSESSSSYSDWVANVTNEPTCSTPKVADIIKRLKEKNNNNNDNHGQEQSNNTSNNNNNNMMMVMMMGSSSSSSSLSRLKVRACREQGEHHHTSVLLHQVTSSPRLRGRRAYTDLLMQMERDRHGELNHLAQLAPVSNFSQRGRSRIQSLLRLRLLKRHHESTIYEATRQPKGSTIMHLRERFNVETMKQGSTRQPEIASSSRNTSPNQPQNPSSPNNPRDDHGSNRVVDVTDGCQTADDNNANDHSVACAHNKPMSQTNEEQEEAHANSETQKVAALSEEVGETSTCNMVDSNANHETTKDSEEDLAEVKQDNYSAETEISYVDETMNIEEEGYASEGNDFVDDEHYYYDWISPISRPRSYWEDRRQAWYREMLDTASSDKREIRQLLERRTVSSFLSSDMRERMDKLMEYHVGTQTHFISRQDQEDDEDGGGRMGHQLMSFLQQRIQRHAGHNNHREDEPEEGDEKQEYVQQEQEEEEEEEEEEEESLSNNNGVYNETSDDGNQSSSSTQIFSSPSPNMSSWSYRDNEASDDSDRLESATSSTQPSYRQSSSSINPHSMEMDLIYDMRGQMKQLYREMAEIRKSLNSCIDMQMMLQKSMKRDINSALREKKKKKTTNEQKPQKKGNCCICYDKKVDSLLYRCGHMCTCMKCANELQWNSGKCPICRAPIADVVKVYVDV 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1362 870 Coils Coil 101 121 - -
Prci3g1362 870 MobiDBLite consensus disorder prediction 70 94 - -
Prci3g1362 870 MobiDBLite consensus disorder prediction 79 94 - -
Prci3g1362 870 MobiDBLite consensus disorder prediction 459 485 - -
Prci3g1362 870 MobiDBLite consensus disorder prediction 654 679 - -
Prci3g1362 870 ProSiteProfiles Zinc finger RING-type profile. 818 857 IPR001841 -
Prci3g1362 870 MobiDBLite consensus disorder prediction 232 250 - -
Prci3g1362 870 MobiDBLite consensus disorder prediction 226 250 - -
Prci3g1362 870 MobiDBLite consensus disorder prediction 680 717 - -
Prci3g1362 870 MobiDBLite consensus disorder prediction 377 411 - -
Prci3g1362 870 Coils Coil 653 683 - -
Prci3g1362 870 PANTHER BNAC05G24000D PROTEIN 1 869 - -
Prci3g1362 870 MobiDBLite consensus disorder prediction 727 746 - -
Prci3g1362 870 Pfam Zinc finger, C3HC4 type (RING finger) 815 863 - -
Prci3g1362 870 SUPERFAMILY RING/U-box 806 862 - -
Prci3g1362 870 MobiDBLite consensus disorder prediction 486 502 - -
Prci3g1362 870 CDD mRING-HC-C3HC5_NEU1 815 867 - -
Prci3g1362 870 MobiDBLite consensus disorder prediction 374 506 - -
Prci3g1362 870 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 793 869 IPR013083 -
Prci3g1362 870 MobiDBLite consensus disorder prediction 641 746 - -
Prci3g1362 870 MobiDBLite consensus disorder prediction 419 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1362 Prci-Chr3 22218828 22224860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1362 818 866 C3H Transcription Factor Family AT3G06140 42.857 1.76e-08 55.5