Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1350 ATGGATCTTTCTTTGAGTGTTGGAAGTGGATCTGGTGATGAGCAAAACACTGCTAGCTCTCAGCAGACTGGAAGGAAGTCTGCTCATCGCCACACACCTTTACAGATCCAGCGACTCGAAGAGTTTTTCAAGGAATGTCCACACCCTGATGAGGAACAACGCAAGGATTTAGGCAAGGAGCTCGGGCTTGAACCCAAGCAAATCAAGTTCTGGTTTCAGAACAAGAGAACTCAAACCAAGACACAGAATGAACGAATTGATAACAATGTTCTTCGTGCTGAGAATGAAAGAATTCAAAATGAGAATTGTGCAATCAAAGAGGTTCTCAAGGGTGTGAACTGCCCTGCTTGTGGTGGCCCCGCTAATAATGGAGACGAAGAACACATGCTTAATATTCAAAAACTGCTCCAAGAGAATGCCTATCTCAAACAAGAGCATGAGAAGGCAACAAGGCTTCTTGGGGACTATGTTGGGAAGCCTATGATAATCCAAAAGGATTTCCTAACCCTAGGAACCCCATCATCATCGTCATCAGAACAAGCAGCCATGTCCATGTCCATGTCTGATGATAACAGCAACATGTTGCCACCAAAACAAGGCACCATCAACAGCAAGGCAGTCATGTGGGAGACAGCTGTGAGCTCCATGGAAGAACTGGTGAGGCTTCTGCGTGTGAACGAGCCACTGTGGATCCGGTCTGAAGCTTCCGAAGATGTCGACGACAACAACGAAGGCTTCTTCCTCCCTAACCGCAGCAGCTACGAAAGGATCTTCCCTAGGGCTCATCATTTTGGCAAGAAGCTCAACAATGCTCGTGTTGAATGTTCCAAAGCTTCACGTGTTGTCAACATGGGCCCCATGCAACTGGTTGACATGTTTCTAGACGCTGATAAATGGGTTAATCTGTTCCCGACAATTGTTGGAAAAGCGCACACAGTAGAAGTACTCGAAGCTGGTTTGCCAGGGAGCAGGAATGGAGCCTTGCAGCTGATGTATGAAGAGCTTCACATGCTGACGCCAATGGTGCCACCTCGTGAATTCGTGTTCCTTCGATACTGTTACCAAACGGACAAGGAAACATGGGTGATCGGAGATGTGTCGTTTGATTCTCTTGAAGACATTGGTGCTACATATTCTGCTTCTTGCTGGAAGCTTCCTTCTGGATGCATGATTCAAGAACTGCCCACTGGATTTTCCAAGGTTACATGGGTGGAGCATGTGGAAGTGGAGCATCAAAGCCTTATCGTGCACATGCTGTATAGAAACCTTGTTTTCAGCAGCGTTGCTTATGGAGCTCAACGATGGGTCGTGGCCCTTCAGCGGATTTGCGAGAGAATTGCTTACACCATAAACCCTCACATTCCTCCTCTCGATGAAGCTCCGTTAGGGGCGAGCTCAGCAGAAGGAAGAAGGAGCTTAATGAAGTTGGGGCATCGAATGATAAGGAGCTTCTGTGGAGTGATAAGCATGACTGGCAGTGGAAGGGAAGATTTTACAGAGATAAGTGAAGATAATGAGATTGGTATCAGAGCTTTCATCCGAAAGAATCTCGACAGAGGTCAGCCTCAGGGCATGACTCTCACTGCTGCTGCTCCTATTTGGCTTCCTTTTCCTCCCAACCGTGTCTTCCACTTCCTCCGTGACGTCTCTCGCCGATACCAGTGGGATGTTCTTTGCCATGAAAATACTGAGAAAGAGATTGTACGCATCTCAACTGGAACTCATCCTGGAAACTACATATCAATTATTCAGACATACCATGAGAGTGACAGCGTGGCAATTCTTCAAGAAACTTGCATGGAGCCGATGGGATATGCGCTGGTGTACGCTCCAGTGGATAAGCTGACGATGAATGGTGTCATGAACGGGGAGGATTCGGCCACCGTGTCGATACTGCCGTCCGGTTTTGTGGTCGTGAAGGATGGCAGCGGTGGCGGAAGGGGTGAATGTGGTGGTGGTTCTTCTTCCGGCGGCGAAGGGTCCGTTCTGACAATGACCTTACAAATTCTGGTCAGCAACAGTGTGACAATGAGGAACATGAACATGGAGAGTGTGGCGACGGTGAACAACCTTGTGACGGCCACACTCAACAAGATCAAGTTTGCTCTGATGAGTATCGATTAG 2124 0.4793 MDLSLSVGSGSGDEQNTASSQQTGRKSAHRHTPLQIQRLEEFFKECPHPDEEQRKDLGKELGLEPKQIKFWFQNKRTQTKTQNERIDNNVLRAENERIQNENCAIKEVLKGVNCPACGGPANNGDEEHMLNIQKLLQENAYLKQEHEKATRLLGDYVGKPMIIQKDFLTLGTPSSSSSEQAAMSMSMSDDNSNMLPPKQGTINSKAVMWETAVSSMEELVRLLRVNEPLWIRSEASEDVDDNNEGFFLPNRSSYERIFPRAHHFGKKLNNARVECSKASRVVNMGPMQLVDMFLDADKWVNLFPTIVGKAHTVEVLEAGLPGSRNGALQLMYEELHMLTPMVPPREFVFLRYCYQTDKETWVIGDVSFDSLEDIGATYSASCWKLPSGCMIQELPTGFSKVTWVEHVEVEHQSLIVHMLYRNLVFSSVAYGAQRWVVALQRICERIAYTINPHIPPLDEAPLGASSAEGRRSLMKLGHRMIRSFCGVISMTGSGREDFTEISEDNEIGIRAFIRKNLDRGQPQGMTLTAAAPIWLPFPPNRVFHFLRDVSRRYQWDVLCHENTEKEIVRISTGTHPGNYISIIQTYHESDSVAILQETCMEPMGYALVYAPVDKLTMNGVMNGEDSATVSILPSGFVVVKDGSGGGRGECGGGSSSGGEGSVLTMTLQILVSNSVTMRNMNMESVATVNNLVTATLNKIKFALMSID 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1350 707 Pfam START domain 212 445 IPR002913 GO:0008289
Prci3g1350 707 SMART HOX_1 24 86 IPR001356 GO:0003677
Prci3g1350 707 MobiDBLite consensus disorder prediction 1 34 - -
Prci3g1350 707 SUPERFAMILY Bet v1-like 468 684 - -
Prci3g1350 707 SUPERFAMILY Bet v1-like 208 447 - -
Prci3g1350 707 Coils Coil 132 152 - -
Prci3g1350 707 FunFam Homeobox-leucine zipper protein HDG1 11 98 - -
Prci3g1350 707 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Prci3g1350 707 Pfam Homeodomain 26 80 IPR001356 GO:0003677
Prci3g1350 707 Coils Coil 76 101 - -
Prci3g1350 707 SMART START_1 210 445 IPR002913 GO:0008289
Prci3g1350 707 ProSiteProfiles START domain profile. 201 448 IPR002913 GO:0008289
Prci3g1350 707 Gene3D - 262 440 IPR023393 -
Prci3g1350 707 SUPERFAMILY Homeodomain-like 6 83 IPR009057 -
Prci3g1350 707 CDD START_ArGLABRA2_like 205 444 - -
Prci3g1350 707 MobiDBLite consensus disorder prediction 1 30 - -
Prci3g1350 707 CDD homeodomain 25 83 IPR001356 GO:0003677
Prci3g1350 707 Gene3D - 11 97 - -
Prci3g1350 707 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 25 703 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1350 Prci-Chr3 21912535 21919405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1350 25 703 Homeobox Transcription Factor Family AT1G73360 42.999 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci3g1350 START 2.1e-34 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1350 K09338 - qsa:O6P43_014240 667.537