Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1349 ATGGCTTCTTCTTTGCCTCTTTCTCAGCCTACTACTCACAGCTTCTTCTCTAAAACCCAGGTTCAATTTCCCTCTTCTCGCTCTTCTCTTTCCTCCACTTCCAATCTTGACATTTTCATCAATTTTGGGTTTAATCTAAAGCAGTTGAAAGGATTTAACCATGGCTCCCGGCGACCTAGCTTCTCATTTTGCCGCGACAACGAAAACAAAATTCGACCTATCAATGCTTTGGTTGATACAGGCCCATTCCCCTTGTTTCAACCTCCCAAAGTTGAAGAGTCGTCGTCTGAGTTGGAGCCAGCAGACCCTGATTTCTACAAAATAGGTTATATTCGAAGCATGCGAGCTTATGGAGTTGAGTTTAAGGAAGGGCCTGATGGGTTTGGTGTGTATGCTTCTAAAGATGTAGAACCTCTTCGCCGAGCCAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACTGTGAGTCAGAAGCTCCCATGGATGTTCTTCCCTGATATAATTCCAGTGGGACATCCGATATTTGATATAATCAACTCAACAAATCCAGAGACAGATTGGCACCTAAGACTAGCATGCCTACTGTTATATGCATTGGATTGTCAGGACAACTTTTGGCAGTTGTATGGTGACTTCTTACCCAGTGCTGATGAATGCACTAGCTTACTTCTGGCAACAGAGGCAGAACTTTTGGAGCTGCAGGATCCCAATCTTGCATCTACCATCAGGAATCAGCAACGCCAAGCCTCACAATTTTGGGAGAAGAATTGGCACACTGGTGTTCCCCTTAAAATAAAGCGTCTTGCTCGTGATCCCCAGAGATTCATGTGGGCAGTGAGTATAGTACAGTCACGATGCATTAATATGCAAATGAGGATCGGTGCACTACATCAGGATGCAAATATGCTGATTCCTTATGCTGACATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGCTTCAAGGACCAGATGGTTGAGGTGCTTATAAATGCTGGACAGAGGATTAGAAAGGGAGATGAGATGACCGTCGATTACATGAGCAGGCAAAAGAATGACATGTTTATGCAAAGATATGGCTTTTCATCATCTGTGAACCCTTGGGATGAGATCAAATTCTCTGGAGATGCACGGATACATTTGGATTCCTTCTTGTCCGTGTTCAATATATCTGGCCTTCCTGAAGAGTATTATCATAACACTCTTCTATCTAAGGAGGGCGATACGTTTGTTGATGGAGCAGTCATTGCTGCAGCACGGACGCTGCCAACTTGGTCAGATGGGGATATACCTCCAATCCCTAGTGTGGAACGGAAGGCTGTGAAGGAGTTACAAAATGAATGCCAACAAATGCTTGCAGAATTTCCCACAACCTCCAAGCAAGACCAAAAATTGATAGATTCAATGCAAGATGCTACCAGGCCACTTGAAACTGCAATAAAGTACAGATTGCACAGGAAATTGTTCATAGAGAAAGTCATCCAAACATTGGACATCTATCAGGAGAGATTGCTCTTTTGA 1533 0.4331 MASSLPLSQPTTHSFFSKTQVQFPSSRSSLSSTSNLDIFINFGFNLKQLKGFNHGSRRPSFSFCRDNENKIRPINALVDTGPFPLFQPPKVEESSSELEPADPDFYKIGYIRSMRAYGVEFKEGPDGFGVYASKDVEPLRRARVIMEIPLELMLTVSQKLPWMFFPDIIPVGHPIFDIINSTNPETDWHLRLACLLLYALDCQDNFWQLYGDFLPSADECTSLLLATEAELLELQDPNLASTIRNQQRQASQFWEKNWHTGVPLKIKRLARDPQRFMWAVSIVQSRCINMQMRIGALHQDANMLIPYADMLNHSFEPNCFFHWRFKDQMVEVLINAGQRIRKGDEMTVDYMSRQKNDMFMQRYGFSSSVNPWDEIKFSGDARIHLDSFLSVFNISGLPEEYYHNTLLSKEGDTFVDGAVIAAARTLPTWSDGDIPPIPSVERKAVKELQNECQQMLAEFPTTSKQDQKLIDSMQDATRPLETAIKYRLHRKLFIEKVIQTLDIYQERLLF 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1349 510 Pfam SET domain 127 350 IPR001214 GO:0005515
Prci3g1349 510 CDD SET_LSMT 118 365 - -
Prci3g1349 510 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 74 476 - -
Prci3g1349 510 Gene3D - 362 508 IPR036464 -
Prci3g1349 510 ProSiteProfiles SET domain profile. 89 351 IPR001214 GO:0005515
Prci3g1349 510 Pfam Rubisco LSMT substrate-binding 440 491 IPR015353 -
Prci3g1349 510 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 362 505 IPR036464 -
Prci3g1349 510 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 111 365 - -
Prci3g1349 510 SUPERFAMILY SET domain 126 365 IPR046341 -
Prci3g1349 510 Gene3D set domain protein methyltransferase, domain 1 111 361 - -
Prci3g1349 510 FunFam Plastid transcriptionally active 14 387 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1349 Prci-Chr3 21848249 21860250 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci3g1349 SET 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1349 - - gmx:100790985 786.178