Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1348 ATGGCTTCTTCTTTGCCTCTTTCTCAGCCTACTACTCACAGCTTCTTCTCTAAAACCCAGTTGAAAGGATTTAACCATGGCTCCCGGCGACCTAGCTTCTCATTTTGCCGCGACAACGAAAACAAAATTCGACCTATCAATGCTTTGGTTGATACAGGCCCATTCCCCTTGTTTCAACCTCCCAAAGTTGAAGAGTCGTCGTCTGAGTTGGAGCCAGCAGACCCTGATTTCTACAAAATAGGTTATATTCGAAGCATGCGAGCTTATGGAGTTGAGTTTAAGGAAGGGCCTGATGGGTTTGGTGTGTATGCTTCTAAAGATGTAGAACCTCTTCGCCGAGCCAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACTGTGAGTCAGAAGCTCCCATGGATGTTCTTCCCTGATATAATTCCAGTGGGACATCCGATATTTGATATAATCAACTCAACAAATCCAGAGACAGATTGGCACCTAAGACTAGCATGCCTACTGTTATATGCATTGGATTGTCAGGACAACTTTTGGCAGTTGTATGGTGACTTCTTACCCAGTGCTGATGAATGCACTAGCTTACTTCTGGCAACAGAGGCAGAACTTTTGGAGCTGCAGGATCCCAATCTTGCATCTACCATCAGGAATCAGCAACGCCAAGCCTCACAATTTTGGGAGAAGAATTGGCACACTGGTGTTCCCCTTAAAATAAAGCGTCTTGCTCGTGATCCCCAGAGATTCATGTGGGCAGTGAGTATAGTACAGTCACGATGCATTAATATGCAAATGAGGATCGGTGCACTACATCAGGATGCAAATATGCTGATTCCTTATGCTGACATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGCTTCAAGGACCAGATGGTTGAGGTGCTTATAAATGCTGGACAGAGGATTAGAAAGGGAGATGAGATGACCGTCGATTACATGAGCAGGCAAAAGAATGACATGTTTATGCAAAGATATGGCTTTTCATCATCTGTGAACCCTTGGGATGAGATCAAATTCTCTGGAGATGCACGGATACATTTGGATTCCTTCTTGTCCGTGTTCAATATATCTGGCCTTCCTGAAGAGTATTATCATAACACTCTTCTATCTAAGGAGGGCGATACGTTTGTTGATGGAGCAGTCATTGCTGCAGCACGGACGCTGCCAACTTGGTCAGATGGGGATATACCTCCAATCCCTAGTGTGGAACGGAAGGCTGTGAAGGAGTTACAAAATGAATGCCAACAAATGCTTGCAGAATTTCCCACAACCTCCAAGCAAGACCAAAAATTGATAGATTCAATGCAAGATGCTACCAGGCCACTTGAAACTGCAATAAAGTACAGATTGCACAGGAAATTGTTCATAGAGAAAGTCATCCAAACATTGGACATCTATCAGGAGAGATTGCTCTTTTGA 1449 0.4362 MASSLPLSQPTTHSFFSKTQLKGFNHGSRRPSFSFCRDNENKIRPINALVDTGPFPLFQPPKVEESSSELEPADPDFYKIGYIRSMRAYGVEFKEGPDGFGVYASKDVEPLRRARVIMEIPLELMLTVSQKLPWMFFPDIIPVGHPIFDIINSTNPETDWHLRLACLLLYALDCQDNFWQLYGDFLPSADECTSLLLATEAELLELQDPNLASTIRNQQRQASQFWEKNWHTGVPLKIKRLARDPQRFMWAVSIVQSRCINMQMRIGALHQDANMLIPYADMLNHSFEPNCFFHWRFKDQMVEVLINAGQRIRKGDEMTVDYMSRQKNDMFMQRYGFSSSVNPWDEIKFSGDARIHLDSFLSVFNISGLPEEYYHNTLLSKEGDTFVDGAVIAAARTLPTWSDGDIPPIPSVERKAVKELQNECQQMLAEFPTTSKQDQKLIDSMQDATRPLETAIKYRLHRKLFIEKVIQTLDIYQERLLF 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1348 482 CDD SET_LSMT 90 337 - -
Prci3g1348 482 Pfam SET domain 99 322 IPR001214 GO:0005515
Prci3g1348 482 Pfam Rubisco LSMT substrate-binding 412 463 IPR015353 -
Prci3g1348 482 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 83 337 - -
Prci3g1348 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 64 448 - -
Prci3g1348 482 Gene3D - 334 480 IPR036464 -
Prci3g1348 482 SUPERFAMILY SET domain 98 337 IPR046341 -
Prci3g1348 482 ProSiteProfiles SET domain profile. 61 323 IPR001214 GO:0005515
Prci3g1348 482 FunFam Plastid transcriptionally active 14 359 479 - -
Prci3g1348 482 Gene3D set domain protein methyltransferase, domain 1 83 333 - -
Prci3g1348 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 477 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1348 Prci-Chr3 21848249 21860250 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci3g1348 SET 9.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1348 - - gmx:100790985 801.201