Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1168 ATGATCTCAATAGAAGATCTTGGGACAACGGCTAACTGCTCTTATAATTCGATTTCTTCGTCTGCGACTGGGTCTGATATCTCGAGGCTGTTCAATCCAACTTCGCATAAAATTGTTGATTCTAATGGGGTTTCGCAAGGTGCGTTGGCGTCACCGAATTCGTTGGTGCTGAATGGTGAGAAGGAGGATCTAATGAAGTCCCCTATAAATATAGGAAAGAAAGAGGCGTCTGAGGCAAAAGCTTTGGCTGCTATGAAGAACCACAGTGAAGCAGAGAGGAGGAGAAGGGAGAGAATAAATGGTCATCTTGATACACTTCGTGGTCTTGTGCCCAGCAATGCGAAGATGGACAAAGCAACGTTATTGGCTGAAGTAATCAACCAAGTGAAGTTACTGAAGAAGAATGCAATGGAAGCAAGCAGAGGTTTTCTTATCCCAATGGATGATGATGAAGTTAAAGTTGAATCATGCAACCATGAAGGAAGAGATGGATCAATGTTTTACATGGCATCTATATGTTGCGATTACCGGCCGGAGCTACTATCTGACCTGAGACAGGCTCTTGATGGCCTTCAACTACAATTGATGAGGGCAGAAATATCAACTTTGGGAGGAAGGGTGAAGAATGTGTTTTTCTTTAGATGCTGCAAAACAGAACATATTAATATTGAGGCATGCCAACTTGTTCCAAGTACTGTCCACCAGGTGCTGAGCTCCGTACTGGAGAGGGCTTCTAGCTCACTGGAATACTCTCTAGGAATGTCACTTCGAAGCAAGCGTCGAAGACTTTGCTTCCTTGAAACATCAACTTCCTCATGA 819 0.4371 MISIEDLGTTANCSYNSISSSATGSDISRLFNPTSHKIVDSNGVSQGALASPNSLVLNGEKEDLMKSPINIGKKEASEAKALAAMKNHSEAERRRRERINGHLDTLRGLVPSNAKMDKATLLAEVINQVKLLKKNAMEASRGFLIPMDDDEVKVESCNHEGRDGSMFYMASICCDYRPELLSDLRQALDGLQLQLMRAEISTLGGRVKNVFFFRCCKTEHINIEACQLVPSTVHQVLSSVLERASSSLEYSLGMSLRSKRRRLCFLETSTSS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1168 272 PANTHER TRANSCRIPTION FACTOR BHLH30 42 266 IPR045847 GO:0003700|GO:0006355
Prci3g1168 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 135 IPR036638 GO:0046983
Prci3g1168 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 132 IPR011598 GO:0046983
Prci3g1168 272 Gene3D - 78 141 IPR036638 GO:0046983
Prci3g1168 272 CDD ACT_UUR-ACR-like 171 212 - -
Prci3g1168 272 SMART finulus 89 138 IPR011598 GO:0046983
Prci3g1168 272 Pfam Helix-loop-helix DNA-binding domain 87 132 IPR011598 GO:0046983
Prci3g1168 272 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1168 Prci-Chr3 15194011 15197200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1168 71 263 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.640 1.93e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci3g1168 HLH 2.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1168 - - gmx:100804756 322.783