Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1165 ATGGATTTCTCCAAGAAGCGCAAAACTGAGGAGAACGGAGACAACGATTCCGTGCCCTCGACAACCCCGCTTGGCGCCGATGACATCCACAAGATTCTCCAACCCTTCTCACAAGAACAGCTTGTCGAGCTTCTTCAATCAGCTGCTCTTCATCACCCTGACGTTCTCGAGTCTATACGTTCCGTCGCCGACCGTGACTCCACCGTTCGGAAACTCTTTGTTCGGGGGCTTGCGGGGGAAACCACCACGGAGACGCTCAGCAGTGTTTTCTCCTCCTTTGGAGAGCTCGATGAGGCGATCGTTATCTTCGACAAAACAACGGGGAAGTCCAAAGGATACGGCTTTGTGACGTTTAAGCACGTTGATGGTGCTATATTGGCTTTGAAGGAGCCCAGCAAGAAAATTGATGGGAGAATGACGGTGACCCAGCTTGCAGCTGCTGGATTATCGGCCAGTCAAGGGACTAATGCGGCTGCCGCAGCCACAAGTGATGTTTCTACCCGGAAAATTTTTGTGGGCAATGTGCCGTTTGATATCTCGTCGGAGAGGCTGTTGAGTTACTTTTTGGCATTTGGCGAAATCGAAGAAGGGCCACTTGGGTTTGACAAAGGTAATGGAAAGTCCAAAGGTTTCGCATTCTTTGTGTACAAAACGGAGGAGGGCGCTAGGGCGTCTCTAGTTGAGCCAGTCAAAACTATTGATGGTCATCAAGTGCTTTGTAAATTAGCCATGGATAACAAGAAGGGAAAATCAGGAGGAGCTCCTAACCAGGGTCCTCCTGGTTTACAAGGTAATGGCATGGCAGCACAGCAACCGCAACCATCTTTACCCGGTCCTATGATGGGATCAAATTATGGCGGTCATGGATCTTCATATGGGGGATTTGGTGGTGCGCATCCGGGTCCCATGACGGTGCCTAGTAATAATTATGGTTTGCAGTCTTCATTGCCGCCATATGGCACTCAAGTTCCATCTACCTTAACTCCTAATAGTGGTGGGGGGTACGGTCCAGGAATTGGAGGGCCTTACGGTGGCTCTCAGTTCAGTGGGCCAACTTCTGGTGATTATGGTGCTAGGCTGCCTCCAACTTCTGCTGGAATGCCTTCCGGAGGATATCCAGACGGTTCTCATTATAATATGACCTCATCTGCAGTTCCCTCGCAGCATCAACAGCCCATGCAAATGCCAAGGCTGGCTCCCGGAGGAATGTACCAAGGCATGCCACCCTACTACTGA 1236 0.5073 MDFSKKRKTEENGDNDSVPSTTPLGADDIHKILQPFSQEQLVELLQSAALHHPDVLESIRSVADRDSTVRKLFVRGLAGETTTETLSSVFSSFGELDEAIVIFDKTTGKSKGYGFVTFKHVDGAILALKEPSKKIDGRMTVTQLAAAGLSASQGTNAAAAATSDVSTRKIFVGNVPFDISSERLLSYFLAFGEIEEGPLGFDKGNGKSKGFAFFVYKTEEGARASLVEPVKTIDGHQVLCKLAMDNKKGKSGGAPNQGPPGLQGNGMAAQQPQPSLPGPMMGSNYGGHGSSYGGFGGAHPGPMTVPSNNYGLQSSLPPYGTQVPSTLTPNSGGGYGPGIGGPYGGSQFSGPTSGDYGARLPPTSAGMPSGGYPDGSHYNMTSSAVPSQHQQPMQMPRLAPGGMYQGMPPYY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1165 411 SUPERFAMILY RNA-binding domain, RBD 60 145 IPR035979 GO:0003676
Prci3g1165 411 Gene3D - 61 149 IPR012677 -
Prci3g1165 411 MobiDBLite consensus disorder prediction 246 285 - -
Prci3g1165 411 MobiDBLite consensus disorder prediction 263 278 - -
Prci3g1165 411 SMART rrm1_1 71 143 IPR000504 GO:0003723
Prci3g1165 411 SMART rrm1_1 169 241 IPR000504 GO:0003723
Prci3g1165 411 PANTHER GEO13361P1-RELATED 53 313 - -
Prci3g1165 411 MobiDBLite consensus disorder prediction 1 24 - -
Prci3g1165 411 MobiDBLite consensus disorder prediction 297 375 - -
Prci3g1165 411 SUPERFAMILY RNA-binding domain, RBD 161 264 IPR035979 GO:0003676
Prci3g1165 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 236 IPR000504 GO:0003723
Prci3g1165 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 138 IPR000504 GO:0003723
Prci3g1165 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 256 IPR000504 GO:0003723
Prci3g1165 411 MobiDBLite consensus disorder prediction 306 332 - -
Prci3g1165 411 Gene3D - 150 297 IPR012677 -
Prci3g1165 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 147 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1165 Prci-Chr3 15182826 15187447 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1165 160 375 C2H2 Transcription Factor Family AT2G19380 27.876 5.42e-17 81.3