Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1125 ATGGGTTTTACAGATCCAGAAGATGACTCACTCGGTATCGGCCTGAAGGTGATGCTCGCCGCAGCTTTCACGTTATTCGCCATCATCTTCTTCATAATCGTCTTCCACTTCTACGCCAGACGCCTCCGCCTAAGTCGTCAGCTGAGTCTGCTCGACAGACGCCTCGACGATCAACCGGTTTATCAATTCAGTACTCATCAAGTTTTGCCGGTTAATGTGGAATCGAGTTCACCAAACCATGACCGTCAGGGTCTTGATCCTTCCGTCATAGCGTCGATTCCTAAACTCTGGTACAAGCATACGGACCAGTTCAACGACGGCGAAGCCGTAGAGTGCTCGGTTTGCTTAGCCACCATTGGGGAAGATGCAACCGTTAGGGTTTTGCCTAACTGCAAGCATGTATTTCATGTTGATTGTGTTGACACTTGGTTCGGTACCAACACCACTTGCCCGATCTGCCGCACCGTGGCTGAACCCACCGTGCCCGTTGGTGGCGCAGTTCAACCCACGGCACCGCCGGAATTAGAGAGTAGCGGGACGATCTAA 546 0.5201 MGFTDPEDDSLGIGLKVMLAAAFTLFAIIFFIIVFHFYARRLRLSRQLSLLDRRLDDQPVYQFSTHQVLPVNVESSSPNHDRQGLDPSVIASIPKLWYKHTDQFNDGEAVECSVCLATIGEDATVRVLPNCKHVFHVDCVDTWFGTNTTCPICRTVAEPTVPVGGAVQPTAPPELESSGTI 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1125 181 PANTHER RING-H2 FINGER PROTEIN ATL16 18 172 IPR044600 GO:0016567|GO:0016740
Prci3g1125 181 SMART ring_2 112 153 IPR001841 -
Prci3g1125 181 SUPERFAMILY RING/U-box 93 159 - -
Prci3g1125 181 FunFam E3 ubiquitin-protein ligase ATL6 73 160 - -
Prci3g1125 181 Pfam Ring finger domain 111 154 IPR001841 -
Prci3g1125 181 CDD RING-H2_EL5-like 111 154 - -
Prci3g1125 181 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Prci3g1125 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 159 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1125 Prci-Chr3 14672881 14673830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1125 6 159 C3H Transcription Factor Family AT2G42360 37.107 5.36e-29 105