Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1052 ATGGCACCCAGGGAGAAGTCTGCCGCCGTTAAATCTAATGTTCACGGCGGCCTCAAGGAGGTGCATTTTAGGGGGGTTAGGAAGAGACCCTGGGGGAGATACGCCGCTGAAATTAGAGATCCCGGCAAGAAGAGCCGTGTCTGGCTAGGGACTTTCGATACCGCCGAAGAGGCCGCGAGGGCTTACGACGCTGCCGCCCGGGAATTCCGGGGGGTCAAGGCTAAAACCAACTTCCCTTTTCCTTCCGAGAATGTGAGCCAACAAACTAGTCCGGCTCAGAGCAGTACGGTCGAGTCTTCCAGCCGTGACCTTGAGCCGGCTCGTCGGATGGATTCGTCGCCGCTGGACCTCAACCTGTCCTCCCACGCAGGAGGATCCGTCACCAGCTCCGTGCGTTTCCCTTTCCAGCAGCAGTTTCCGTTGCCGCCTGCGATATTCCCCGGCACGCTTCCGCAGGTGAATCAGGCGTTTTACCTTGACGCGGTGCTGCGCGCGAGCATGGCGGCGGGTCAGGCCTTCCATGGAATCGTGTTCGACGGGCGTCGTTCCGCGGCAAGTGAATTTCGCTCCGGTGGAGTGCAAAGCGATTCCGATTCCTCCACAGTGATCGATCTCAACGTTCGCGATGATGGTAAGACTTCTCGAAAGGAGTTGGATCTCGATCTCAACCAACCCCCTGCGGAGGACATGGCATGA 696 0.5876 MAPREKSAAVKSNVHGGLKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGVKAKTNFPFPSENVSQQTSPAQSSTVESSSRDLEPARRMDSSPLDLNLSSHAGGSVTSSVRFPFQQQFPLPPAIFPGTLPQVNQAFYLDAVLRASMAAGQAFHGIVFDGRRSAASEFRSGGVQSDSDSSTVIDLNVRDDGKTSRKELDLDLNQPPAEDMA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1052 231 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Prci3g1052 231 MobiDBLite consensus disorder prediction 187 231 - -
Prci3g1052 231 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Prci3g1052 231 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Prci3g1052 231 MobiDBLite consensus disorder prediction 203 223 - -
Prci3g1052 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 223 - -
Prci3g1052 231 MobiDBLite consensus disorder prediction 79 101 - -
Prci3g1052 231 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Prci3g1052 231 MobiDBLite consensus disorder prediction 188 202 - -
Prci3g1052 231 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Prci3g1052 231 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Prci3g1052 231 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Prci3g1052 231 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Prci3g1052 231 MobiDBLite consensus disorder prediction 77 121 - -
Prci3g1052 231 FunFam Ethylene-responsive transcription factor 2 21 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1052 Prci-Chr3 13577751 13579222 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1052 1 230 AP2-EREBP Transcription Factor Family AT5G44210 40.000 4.20e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci3g1052 AP2 4.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1052 K09286 - jre:108983254 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g1052 3 13577751 13579222 Prci3g1052 3 13577751 13579222 ECH
Prci7g1865 7 33313283 33314316 Prci3g1052 3 13577751 13579222 ECH