Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1050 ATGGCTTCTTCGTCCTCGCCTTCTTCCATGTCGCGGGAGGGTCACTACAGAGGGGTGAGAAAGCGGCCGTGGGGTCGATACGCTGCAGAGATTCGCGACCCGTGGAAGAAAACGCGCGTTTGGTTGGGCACTTTCGACACTCCAGAAGAGGCTGCGTTGGCCTACGACGGTGCTGCTCGTTCCCTTCGAGGCCCGAAGGCGAAAACCAACTTTCCTCCTGCTCCGGTGGCCGCCGGAGGGTTATCCCTAGACCTGAACGCTCCCACCTCTGATCATCGCTGGCCTCCTATCCCCTCCGGTCGCCTCGTGCTCAACGAGCTTCTCCATGCGGGTGTTCTCAAGGACATGTCCTTTGATCATCCTCCTTCGCCAGCGGCGCCCATTGCGATGGTTCACAACCGGGGCGACGGTTCTGTCTCCGTGGACGGTGGTCATCATCATCAGGTGGCGGAGAGCTCTCCCACCGCGTCATTCCTCGGTCTTGTTCGGCGAGGCCTACCGATCGACTTGAACGAACCTCCTCCCGTGTGGCTATGA 537 0.6052 MASSSSPSSMSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGPKAKTNFPPAPVAAGGLSLDLNAPTSDHRWPPIPSGRLVLNELLHAGVLKDMSFDHPPSPAAPIAMVHNRGDGSVSVDGGHHHQVAESSPTASFLGLVRRGLPIDLNEPPPVWL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1050 178 SUPERFAMILY DNA-binding domain 15 72 IPR016177 GO:0003677
Prci3g1050 178 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Prci3g1050 178 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Prci3g1050 178 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Prci3g1050 178 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 105 - -
Prci3g1050 178 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Prci3g1050 178 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Prci3g1050 178 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Prci3g1050 178 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Prci3g1050 178 FunFam Ethylene-responsive transcription factor 2 15 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1050 Prci-Chr3 13557615 13558503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1050 8 178 AP2-EREBP Transcription Factor Family AT1G28360 46.009 2.19e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci3g1050 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1050 - - cam:101504196 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g1050 3 13557615 13558503 Prci3g1050 3 13557615 13558503 ECH