Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1039 ATGGCTGCATCTTCTGCGGCGCTCAATTCCCTCTCCTCTCTCTCCCTAACCTCTTCTTCTCGCTTCTCTATCCTCCCCACCTCCAAATTCACCTTCTCTCTCCTCCCCAAAACCCCATGCCCATTTCTCTCTACCTCCTCATCCCCCATTTTCCCCAAACCCAAATCCAAGTCCTCTGATGATGTCGACACCTCCTTCTTTGACAATGTAAGACCCGAAGAAGACGTTGCTTTCAACCCCCCGGAACCTCCCGAAGGCTTCACCCCTCCTCCCGTCGACGACGGTCCCGTCGAGACCGAAGAGGAAATAGCCTCCGCTTATGAGGAGCTGTATGGGCCTGCATACAGTGGTGTCTCTGTTCTCGGCAACGATGTGTATGTAATGGACTCTAAGATGAAAAAAGACACTGGATTTGGCTCCAAGGGGAAAAAAGAGAAGGTTAAGGATGGATTTGAAGAAAGGGTAGTGCAGGTCAGAAGGGTGACCAAAGTTGTAAAAGGAGGGAAGCAGTTGCACTTCAGGGCAATTGTGGTTGTGGGCGACAAGAAAGGCCAAGTGGGTGTGGGAGTTGGCAAAGCAAAGGAGGTTATAGGAGCAGTTCAGAAATCTGCTGTCAATGCAAGGCGGAATATCATTACAGTGCCTATGACTAAGTACCTCACTTTCCCTCATAGATCTGAGGGAGACTATGGAGCTGCAAAGGTGATGCTTAGACCTGCTTCACCTGGTACTGGAGTTATTGCAGGTGGGTCTGTGAGAATTGTTCTAGAAATGGCAGGTGTTGAGAATGCTTTGGGAAAGCAACTAGGGAGCAATAATGCCCTCAACAATGCCAGAGCAACAGTTGTTGCTGTGCAGAAAATGAGGCAGTTCCGCCAAGTTGCTGAGGAGAGAGGTATCCCAATGGAAGAACTATGGAAGTAA 924 0.4946 MAASSAALNSLSSLSLTSSSRFSILPTSKFTFSLLPKTPCPFLSTSSSPIFPKPKSKSSDDVDTSFFDNVRPEEDVAFNPPEPPEGFIXPPPVDDGPVETEEEIASAYEELYGPAYSGVSVLGNDVYVMDSKMKKDTGFGSKGKKEKVKDGFEERVVQVRRVTKVVKGGKQLHFRAIVVVGDKKGQVGVGVGKAKEVIGAVQKSAVNARRNIITVPMTKYLTFPHRSEGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFRQVAEERGIPMEELWK 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1039 308 Pfam Ribosomal protein S5, C-terminal domain 229 299 IPR005324 GO:0003735|GO:0005840|GO:0006412
Prci3g1039 308 ProSiteProfiles S5 double stranded RNA-binding domain profile. 152 215 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Prci3g1039 308 MobiDBLite consensus disorder prediction 36 54 - -
Prci3g1039 308 SUPERFAMILY dsRNA-binding domain-like 149 217 - -
Prci3g1039 308 Gene3D - 143 213 - -
Prci3g1039 308 MobiDBLite consensus disorder prediction 77 91 - -
Prci3g1039 308 FunFam 30S ribosomal protein S5 141 213 - -
Prci3g1039 308 Gene3D - 219 307 IPR014721 -
Prci3g1039 308 MobiDBLite consensus disorder prediction 36 98 - -
Prci3g1039 308 PANTHER RIBOSOMAL S SUBUNIT 139 307 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Prci3g1039 308 ProSitePatterns Ribosomal protein S5 signature. 169 201 IPR018192 -
Prci3g1039 308 Pfam Ribosomal protein S5, N-terminal domain 152 216 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Prci3g1039 308 SUPERFAMILY Ribosomal protein S5 domain 2-like 222 300 IPR020568 -
Prci3g1039 308 Hamap 30S ribosomal protein S5 [rpsE]. 133 305 IPR005712 GO:0003735|GO:0006412|GO:0015935
Prci3g1039 308 NCBIfam 30S ribosomal protein S5 150 305 IPR005712 GO:0003735|GO:0006412|GO:0015935
Prci3g1039 308 FunFam 30S ribosomal protein S5 217 308 - -
Prci3g1039 308 MobiDBLite consensus disorder prediction 56 70 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1039 152 292 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 30.872 9.15e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1039 K02988 - qsa:O6P43_012664 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g1039 3 13226607 13228902 Prci3g1039 3 13226607 13228902 ECH