Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1038 ATGGCCTCCACTCTTCATTGGGACCCCGACAAAATGCTTCAACTATACATTCTGGATTATATGAAGAGAAGGGGAATGGATAAGACCGCTGAAATTTTCCAAACGGAGTCGGATGTTATGAATGCTCCTGTTGTGATTCAGTCTCGAGAAGGATTCTTGCATGAATGGTGGTCTGTGTTCTATGACATATATGCCTCTAGGCATCTGAAGCATCAGGAGATTGGGCCAGAAGCCTCTAGCAATGCACTTCAGAATACTAGTAATGGAAGAAGAAATCTCCCTCCTAGAATCCCTCAGCTATCTAAGCAGAGAACTCAGCTGCTTCAACTTGACCCCGCTATTAACAAGATGATGGAGCAACCGGCTACCTTTGCGTTACCACCGAAATATGAGAGAGAGTATCTTGGATATCTAGCCGGAGATTCTAATCCAAATTTACAACTTATCAGTGCAAAGAGACTGAAGTTTCTGGAAGACCACCCACAACTAGACATTGGAATTCAGGCCCATAATCCATTGTTGAAGGATAGTGGAATTGGCATTCAGCAAGGAGGCAATATACCCATGGACTCCCTGGGTAAAGTACAAAGAGGAACTACTGAAGGTCTCAATCTGGTGCCGCTAAATGGATATCCTTTAAATGTAGGTGCTGGACTATATACTGTGGAACCGTTTGAAGAAGAATCCCATAATGTACTAACTTCACTTTTGCAAGCACCAAACTATCAGCAACAATTTCAGGGGCTAGATACACAAAATCAGAAAGCACTTGCATGTACACCTAAGATTCAGGCATCCATATGTCTTGAAAACTCTTCCGTATGCAACAGCCAAGATCCAAGGATTCCCCTCGTAGAAACTGAAATATGCAAAGATAGGCAGGACTGTATAAATGCAGCAGTTGGTAGACCTGTGGATAAAAACATTGTGCCTTTGTCTGATGAGAATGAACATGCTGATCAAAGATCTGGACCTTCCAGGAATCTGAAACTTATTTTTGCGGCATGTGATATGAGGGAAGGTTTTTCATTTGAAGAGGTTGGTTGTCTTCACTCAAGCAAAAGCGAAGTTTTATCCTGCCATTTTTCATCTGATGGGAAGGTTTTAGCAAGTGCTGGACATGAGAAGAAGGTTTTCGTTTGGAATATGGAAACTTTTGATTGTGTTAGTACTTCAGATGCCCATTCGCTTCTCATTACTGATATTCGGTTCAGACCAGGCTCAACCATATTTGCAACATCTTCTGCTGATAAAACTGTAAAAGTATGGGATGCAGCCAAACCAAATAAATCATTGTTTGAGCTTCCTGGGCATGCTGAACAAGTAATGTCATTGGACTTCCACCCAAGAAAGGTGGACCTTCTTTGCTCAAGCGATAGCAATGGCATAATGCGATTATGGAATGTCACCCAAGGCGTTTGTGTGCGGATAAATAAGGGTGGTAGTAAACAAGTCAGATTCCAGCCTCGAATTGCCAACTTTTTGGCTGCTGCTGCAGGAAATATTATTAATGTAATTGACCTCGAGGGTGACAAACTCATACACAAGCTGAAGGGACATGTTAAAGATGTTATTTCCATTTGTTGGGACGTAACAGGAAACTATCTTGCTTCTGTAAGTGAAGATAGCGCACGTGTGTGGTCCGTCACGTCTGATGGAAAATGCATACAAGTATTGCATTCAAATGGGAACAAGTTTCAATCGTGCATATTTCATCCTGTATATTATAACCTCTTAATCATTGGCTGCAATCAGTCCCTGGAGTTTTGGATTCCAACCGAGGGCTGCAAAATATGGACTCATCCTGCTCACAAAGAAGTAATCGCGGGACTAGGAGCTTCACCTGAAAATCAGATGGTTGCCTCTGCTAGCCATGATCATACTGTGAAACTTTGGAAATAA 1902 0.4211 MASTLHWDPDKMLQLYILDYMKRRGMDKTAEIFQTESDVMNAPVVIQSREGFLHEWWSVFYDIYASRHLKHQEIGPEASSNALQNTSNGRRNLPPRIPQLSKQRTQLLQLDPAINKMMEQPATFALPPKYEREYLGYLAGDSNPNLQLISAKRLKFLEDHPQLDIGIQAHNPLLKDSGIGIQQGGNIPMDSLGKVQRGTTEGLNLVPLNGYPLNVGAGLYTVEPFEEESHNVLTSLLQAPNYQQQFQGLDTQNQKALACTPKIQASICLENSSVCNSQDPRIPLVETEICKDRQDCINAAVGRPVDKNIVPLSDENEHADQRSGPSRNLKLIFAACDMREGFSFEEVGCLHSSKSEVLSCHFSSDGKVLASAGHEKKVFVWNMETFDCVSTSDAHSLLITDIRFRPGSTIFATSSADKTVKVWDAAKPNKSLFELPGHAEQVMSLDFHPRKVDLLCSSDSNGIMRLWNVTQGVCVRINKGGSKQVRFQPRIANFLAAAAGNIINVIDLEGDKLIHKLKGHVKDVISICWDVTGNYLASVSEDSARVWSVTSDGKCIQVLHSNGNKFQSCIFHPVYYNLLIIGCNQSLEFWIPTEGCKIWTHPAHKEVIAGLGASPENQMVASASHDHTVKLWK 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1038 633 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Prci3g1038 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 601 633 IPR001680 GO:0005515
Prci3g1038 633 Gene3D - 481 633 IPR015943 GO:0005515
Prci3g1038 633 SMART Lish 9 41 IPR006594 GO:0005515
Prci3g1038 633 MobiDBLite consensus disorder prediction 75 100 - -
Prci3g1038 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 601 633 - -
Prci3g1038 633 MobiDBLite consensus disorder prediction 77 100 - -
Prci3g1038 633 Gene3D - 323 480 IPR015943 GO:0005515
Prci3g1038 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 350 391 IPR001680 GO:0005515
Prci3g1038 633 Pfam WD domain, G-beta repeat 598 633 IPR001680 GO:0005515
Prci3g1038 633 Pfam WD domain, G-beta repeat 351 382 IPR001680 GO:0005515
Prci3g1038 633 Pfam WD domain, G-beta repeat 387 424 IPR001680 GO:0005515
Prci3g1038 633 Pfam WD domain, G-beta repeat 512 548 IPR001680 GO:0005515
Prci3g1038 633 Pfam WD domain, G-beta repeat 431 468 IPR001680 GO:0005515
Prci3g1038 633 PRINTS G protein beta WD-40 repeat signature 411 425 IPR020472 -
Prci3g1038 633 PRINTS G protein beta WD-40 repeat signature 620 633 IPR020472 -
Prci3g1038 633 PRINTS G protein beta WD-40 repeat signature 369 383 IPR020472 -
Prci3g1038 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 435 477 IPR001680 GO:0005515
Prci3g1038 633 SUPERFAMILY WD40 repeat-like 343 633 IPR036322 GO:0005515
Prci3g1038 633 CDD WD40 346 633 - -
Prci3g1038 633 Pfam LisH 11 37 IPR006594 GO:0005515
Prci3g1038 633 ProSitePatterns Trp-Asp (WD) repeats signature. 455 469 IPR019775 -
Prci3g1038 633 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 633 IPR044716 GO:0003714
Prci3g1038 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 392 424 - -
Prci3g1038 633 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 424 IPR001680 GO:0005515
Prci3g1038 633 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 435 472 - -
Prci3g1038 633 SMART WD40_4 343 382 IPR001680 GO:0005515
Prci3g1038 633 SMART WD40_4 385 424 IPR001680 GO:0005515
Prci3g1038 633 SMART WD40_4 552 591 IPR001680 GO:0005515
Prci3g1038 633 SMART WD40_4 594 633 IPR001680 GO:0005515
Prci3g1038 633 SMART WD40_4 510 548 IPR001680 GO:0005515
Prci3g1038 633 SMART WD40_4 428 468 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1038 Prci-Chr3 13219000 13226372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1038 394 614 Miscellaneous Gene Families AT5G08390 26.360 1.52e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Prci3g1038 WD40 0.0033 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1038 - - pcin:129304456 1291.17