Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1037 ATGGCCTCCACTCTTCATTGGGACCCCGACAAAATGCTTCAACTATACATTCTGGATTATATGAAGAGAAGGGGAATGGATAAGACCGCTGAAATTTTCCAAACGGAGTCGGATGTTATGAATGCTCCTGTTGTGATTCAGTCTCGAGAAGGATTCTTGCATGAATGGTGGTCTGTGTTCTATGACATATATGCCTCTAGGCATCTGAAGCATCAGGAGATTGGGCCAGAAGCCTCTAGCAATGTGGCACTTCAGAATACTAGTAATGGAAGAAGAAATCTCCCTCCTAGAATCCCTCAGCTATCTAAGCAGAGAACTCAGCTGCTTCAACTTGACCCCGCTATTAACAAGATGATGGAGCAACCGGCTACCTTTGCGTTACCACCGAAATATGAGAGAGAGTATCTTGGATATCTAGCCGGAGATTCTAATCCAAATTTACAACTTATCAGTGCAAAGAGACTGAAGTTTCTGGAAGACCACCCACAACTAGACATTGGAATTCAGGCCCATAATCCATTGTTGAAGGATAGTGGAATTGGCATTCAGCAAGGAGGCAATATACCCATGGACTCCCTGGGTAAAGTACAAAGAGGAACTACTGAAGGTCTCAATCTGGTGCCGCTAAATGGATATCCTTTAAATGTACTAACTTCACTTTTGCAAGCACCAAACTATCAGCAACAATTTCAGGGGCTAGATACACAAAATCAGAAAGCACTTGCATGTACACCTAAGATTCAGGCATCCATATGTCTTGAAAACTCTTCCGTATGCAACAGCCAAGATCCAAGGATTCCCCTCGTAGAAACTGAAATATGCAAAGATAGGCAGGACTGTATAAATGCAGCAGTTGGTAGACCTGTGGATAAAAACATTGTGCCTTTGTCTGATGAGAATGAACATGCTGATCAAAGATCTGGACCTTCCAGGAATCTGAAACTTATTTTTGCGGCATGTGATATGAGGGAAGGTTTTTCATTTGAAGAGGTTGGTTGTCTTCACTCAAGCAAAAGCGAAGTTTTATCCTGCCATTTTTCATCTGATGGGAAGGTTTTAGCAAGTGCTGGACATGAGAAGAAGGTTTTCGTTTGGAATATGGAAACTTTTGATTGTGTTAGTACTTCAGATGCCCATTCGCTTCTCATTACTGATATTCGGTTCAGACCAGGCTCAACCATATTTGCAACATCTTCTGCTGATAAAACTGTAAAAGTATGGGATGCAGCCAAACCAAATAAATCATTGTTTGAGCTTCCTGGGCATGCTGAACAAGTAATGTCATTGGACTTCCACCCAAGAAAGGTGGACCTTCTTTGCTCAAGCGATAGCAATGGCATAATGCGATTATGGAATGTCACCCAAGGCGTTTGTGTGCGGATAAATAAGGGTGGTAGTAAACAAGTCAGATTCCAGCCTCGAATTGCCAACTTTTTGGCTGCTGCTGCAGGAAATATTATTAATGTAATTGACCTCGAGGGTGACAAACTCATACACAAGCTGAAGGGACATGTTAAAGATGTTATTTCCATTTGTTGGGACGTAACAGGAAACTATCTTGCTTCTGTAAGTGAAGATAGCGCACGTGTGTGGTCCGTCACGTCTGATGGAAAATGCATACAAGTATTGCATTCAAATGGGAACAAGTTTCAATCGTGCATATTTCATCCTGTATATTATAACCTCTTAATCATTGGCTGCAATCAGTCCCTGGAGTTTTGGATTCCAACCGAGGGCTGCAAAATATGGACTCATCCTGCTCACAAAGAAGTAATCGCGGGACTAGGAGCTTCACCTGAAAATCAGATGGTTGCCTCTGCTAGCCATGATCATACTGTGAAACTTTGGAAATAA 1854 0.4218 MASTLHWDPDKMLQLYILDYMKRRGMDKTAEIFQTESDVMNAPVVIQSREGFLHEWWSVFYDIYASRHLKHQEIGPEASSNVALQNTSNGRRNLPPRIPQLSKQRTQLLQLDPAINKMMEQPATFALPPKYEREYLGYLAGDSNPNLQLISAKRLKFLEDHPQLDIGIQAHNPLLKDSGIGIQQGGNIPMDSLGKVQRGTTEGLNLVPLNGYPLNVLTSLLQAPNYQQQFQGLDTQNQKALACTPKIQASICLENSSVCNSQDPRIPLVETEICKDRQDCINAAVGRPVDKNIVPLSDENEHADQRSGPSRNLKLIFAACDMREGFSFEEVGCLHSSKSEVLSCHFSSDGKVLASAGHEKKVFVWNMETFDCVSTSDAHSLLITDIRFRPGSTIFATSSADKTVKVWDAAKPNKSLFELPGHAEQVMSLDFHPRKVDLLCSSDSNGIMRLWNVTQGVCVRINKGGSKQVRFQPRIANFLAAAAGNIINVIDLEGDKLIHKLKGHVKDVISICWDVTGNYLASVSEDSARVWSVTSDGKCIQVLHSNGNKFQSCIFHPVYYNLLIIGCNQSLEFWIPTEGCKIWTHPAHKEVIAGLGASPENQMVASASHDHTVKLWK 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1037 617 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Prci3g1037 617 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 419 456 - -
Prci3g1037 617 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 617 IPR044716 GO:0003714
Prci3g1037 617 SMART WD40_4 412 452 IPR001680 GO:0005515
Prci3g1037 617 SMART WD40_4 494 532 IPR001680 GO:0005515
Prci3g1037 617 SMART WD40_4 369 408 IPR001680 GO:0005515
Prci3g1037 617 SMART WD40_4 578 617 IPR001680 GO:0005515
Prci3g1037 617 SMART WD40_4 536 575 IPR001680 GO:0005515
Prci3g1037 617 SMART WD40_4 327 366 IPR001680 GO:0005515
Prci3g1037 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 585 617 IPR001680 GO:0005515
Prci3g1037 617 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 585 617 - -
Prci3g1037 617 SMART Lish 9 41 IPR006594 GO:0005515
Prci3g1037 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 375 IPR001680 GO:0005515
Prci3g1037 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 419 461 IPR001680 GO:0005515
Prci3g1037 617 ProSiteProfiles Trp-Asp (WD) repeats profile. 376 408 IPR001680 GO:0005515
Prci3g1037 617 Pfam LisH 11 37 IPR006594 GO:0005515
Prci3g1037 617 CDD WD40 330 617 - -
Prci3g1037 617 PRINTS G protein beta WD-40 repeat signature 395 409 IPR020472 -
Prci3g1037 617 PRINTS G protein beta WD-40 repeat signature 604 617 IPR020472 -
Prci3g1037 617 PRINTS G protein beta WD-40 repeat signature 353 367 IPR020472 -
Prci3g1037 617 Pfam WD domain, G-beta repeat 371 408 IPR001680 GO:0005515
Prci3g1037 617 Pfam WD domain, G-beta repeat 335 366 IPR001680 GO:0005515
Prci3g1037 617 Pfam WD domain, G-beta repeat 415 452 IPR001680 GO:0005515
Prci3g1037 617 Pfam WD domain, G-beta repeat 496 532 IPR001680 GO:0005515
Prci3g1037 617 Pfam WD domain, G-beta repeat 582 617 IPR001680 GO:0005515
Prci3g1037 617 Gene3D - 307 464 IPR015943 GO:0005515
Prci3g1037 617 SUPERFAMILY WD40 repeat-like 327 617 IPR036322 GO:0005515
Prci3g1037 617 ProSitePatterns Trp-Asp (WD) repeats signature. 439 453 IPR019775 -
Prci3g1037 617 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 376 408 - -
Prci3g1037 617 Gene3D - 465 617 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1037 Prci-Chr3 13219000 13226372 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1037 378 598 Miscellaneous Gene Families AT5G08390 26.360 1.42e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Prci3g1037 WD40 0.0032 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1037 - - pcin:129304456 1251.5