Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g1036 ATGGCCTCCACTCTTCATTGGGACCCCGACAAAATGCTTCAACTATACATTCTGGATTATATGAAGAGAAGGGGAATGGATAAGACCGCTGAAATTTTCCAAACGGAGTCGGATGTTATGAATGCTCCTGTTGTGATTCAGTCTCGAGAAGGATTCTTGCATGAATGGTGGTCTGTGTTCTATGACATATATGCCTCTAGGCATCTGAAGCATCAGGAGATTGGGCCAGAAGCCTCTAGCAATGTGGCACTTCAGAATACTAGTAATGGAAGAAGAAATCTCCCTCCTAGAATCCCTCAGCTATCTAAGCAGAGAACTCAGCTGCTTCAACTTGACCCCGCTATTAACAAGATGATGGAGCAACCGGCTACCTTTGCGTTACCACCGAAATATGAGAGAGAGTATCTTGGATATCTAGCCGGAGATTCTAATCCAAATTTACAACTTATCAGTGCAAAGAGACTGAAGTTTCTGGAAGACCACCCACAACTAGACATTGGAATTCAGGCCCATAATCCATTGTTGAAGGATAGTGGAATTGGCATTCAGCAAGGAGGCAATATACCCATGGACTCCCTGGGTAAAGTACAAAGAGGAACTACTGAAGGTCTCAATCTGGTGCCGCTAAATGGATATCCTTTAAATGTAGGTGCTGGACTATATACTGTGGAACCGTTTGAAGAAGAATCCCATAATGTACTAACTTCACTTTTGCAAGCACCAAACTATCAGCAACAATTTCAGGGGCTAGATACACAAAATCAGAAAGCACTTGCATGTACACCTAAGATTCAGGCATCCATATGTCTTGAAAACTCTTCCGTATGCAACAGCCAAGATCCAAGGATTCCCCTCGTAGAAACTGAAATATGCAAAGATAGGCAGGACTGTATAAATGCAGCAGTTGGTAGACCTGTGGATAAAAACATTGTGCCTTTGTCTGATGAGAATGAACATGCTGATCAAAGATCTGGACCTTCCAGGAATCTGAAACTTATTTTTGCGGCATGTGATATGAGGGAAGGTTTTTCATTTGAAGAGGTTGGTTGTCTTCACTCAAGCAAAAGCGAAGTTTTATCCTGCCATTTTTCATCTGATGGGAAGGTTTTAGCAAGTGCTGGACATGAGAAGAAGGTTTTCGTTTGGAATATGGAAACTTTTGATTGTGTTAGTACTTCAGATGCCCATTCGCTTCTCATTACTGATATTCGGTTCAGACCAGGCTCAACCATATTTGCAACATCTTCTGCTGATAAAACTGTAAAAGTATGGGATGCAGCCAAACCAAATAAATCATTGTTTGAGCTTCCTGGGCATGCTGAACAAGTAATGTCATTGGACTTCCACCCAAGAAAGGTGGACCTTCTTTGCTCAAGCGATAGCAATGGCATAATGCGATTATGGAATGTCACCCAAGGCGTTTGTGTGCGGATAAATAAGGGTGGTAGTAAACAAGTCAGATTCCAGCCTCGAATTGCCAACTTTTTGGCTGCTGCTGCAGGAAATATTATTAATGTAATTGACCTCGAGGGTGACAAACTCATACACAAGCTGAAGGGACATGTTAAAGATGTTATTTCCATTTGTTGGGACGTAACAGGAAACTATCTTGCTTCTGTAAGTGAAGATAGCGCACGTGTGTGGTCCGTCACGTCTGATGGAAAATGCATACAAGTATTGCATTCAAATGGGAACAAGTTTCAATCGTGCATATTTCATCCTGTATATTATAACCTCTTAATCATTGGCTGCAATCAGTCCCTGGAGTTTTGGATTCCAACCGAGGGCTGCAAAATATGGACTCATCCTGCTCACAAAGAAGTAATCGCGGGACTAGGAGCTTCACCTGAAAATCAGATGGTTGCCTCTGCTAGCCATGATCATACTGTGAAACTTTGGAAATAA 1905 0.4215 MASTLHWDPDKMLQLYILDYMKRRGMDKTAEIFQTESDVMNAPVVIQSREGFLHEWWSVFYDIYASRHLKHQEIGPEASSNVALQNTSNGRRNLPPRIPQLSKQRTQLLQLDPAINKMMEQPATFALPPKYEREYLGYLAGDSNPNLQLISAKRLKFLEDHPQLDIGIQAHNPLLKDSGIGIQQGGNIPMDSLGKVQRGTTEGLNLVPLNGYPLNVGAGLYTVEPFEEESHNVLTSLLQAPNYQQQFQGLDTQNQKALACTPKIQASICLENSSVCNSQDPRIPLVETEICKDRQDCINAAVGRPVDKNIVPLSDENEHADQRSGPSRNLKLIFAACDMREGFSFEEVGCLHSSKSEVLSCHFSSDGKVLASAGHEKKVFVWNMETFDCVSTSDAHSLLITDIRFRPGSTIFATSSADKTVKVWDAAKPNKSLFELPGHAEQVMSLDFHPRKVDLLCSSDSNGIMRLWNVTQGVCVRINKGGSKQVRFQPRIANFLAAAAGNIINVIDLEGDKLIHKLKGHVKDVISICWDVTGNYLASVSEDSARVWSVTSDGKCIQVLHSNGNKFQSCIFHPVYYNLLIIGCNQSLEFWIPTEGCKIWTHPAHKEVIAGLGASPENQMVASASHDHTVKLWK 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g1036 634 ProSiteProfiles LIS1 homology (LisH) motif profile. 9 41 IPR006594 GO:0005515
Prci3g1036 634 SUPERFAMILY WD40 repeat-like 344 634 IPR036322 GO:0005515
Prci3g1036 634 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 425 IPR001680 GO:0005515
Prci3g1036 634 SMART Lish 9 41 IPR006594 GO:0005515
Prci3g1036 634 CDD WD40 347 634 - -
Prci3g1036 634 ProSiteProfiles Trp-Asp (WD) repeats profile. 436 478 IPR001680 GO:0005515
Prci3g1036 634 ProSiteProfiles Trp-Asp (WD) repeats profile. 602 634 IPR001680 GO:0005515
Prci3g1036 634 Gene3D - 482 634 IPR015943 GO:0005515
Prci3g1036 634 Pfam WD domain, G-beta repeat 432 469 IPR001680 GO:0005515
Prci3g1036 634 Pfam WD domain, G-beta repeat 388 425 IPR001680 GO:0005515
Prci3g1036 634 Pfam WD domain, G-beta repeat 513 549 IPR001680 GO:0005515
Prci3g1036 634 Pfam WD domain, G-beta repeat 599 634 IPR001680 GO:0005515
Prci3g1036 634 Pfam WD domain, G-beta repeat 352 383 IPR001680 GO:0005515
Prci3g1036 634 Gene3D - 324 481 IPR015943 GO:0005515
Prci3g1036 634 SMART WD40_4 386 425 IPR001680 GO:0005515
Prci3g1036 634 SMART WD40_4 553 592 IPR001680 GO:0005515
Prci3g1036 634 SMART WD40_4 595 634 IPR001680 GO:0005515
Prci3g1036 634 SMART WD40_4 344 383 IPR001680 GO:0005515
Prci3g1036 634 SMART WD40_4 429 469 IPR001680 GO:0005515
Prci3g1036 634 SMART WD40_4 511 549 IPR001680 GO:0005515
Prci3g1036 634 ProSiteProfiles Trp-Asp (WD) repeats profile. 351 392 IPR001680 GO:0005515
Prci3g1036 634 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 634 IPR044716 GO:0003714
Prci3g1036 634 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 436 473 - -
Prci3g1036 634 Pfam LisH 11 37 IPR006594 GO:0005515
Prci3g1036 634 ProSitePatterns Trp-Asp (WD) repeats signature. 456 470 IPR019775 -
Prci3g1036 634 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 425 - -
Prci3g1036 634 PRINTS G protein beta WD-40 repeat signature 370 384 IPR020472 -
Prci3g1036 634 PRINTS G protein beta WD-40 repeat signature 412 426 IPR020472 -
Prci3g1036 634 PRINTS G protein beta WD-40 repeat signature 621 634 IPR020472 -
Prci3g1036 634 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 602 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g1036 Prci-Chr3 13219000 13226372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g1036 395 615 Miscellaneous Gene Families AT5G08390 26.360 1.56e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Prci3g1036 WD40 0.0033 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g1036 - - pcin:129304456 1297.34