Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0996 ATGGCCTTTGAGCGCTACATTTCTCAGGAATGGAAAAGCACTCCAAGTTCTGTGATGACAGAGACTGGAAACTACAATGGTTGTTTTGATTGCAACATTTGCTTGGACTTTGCACTTGAACCTGTAGTCACCCTCTGTGGTCACCTCTATTGCTGGCCCTGCATCTTCAAGTGGCTCCATGTCCAAAGTTCTTCTCTTGCATCTCATGAACACCCTCAATGCCCAGTCTGCAGGGCTGATATATCTCTTGCCACCATGGTCCCCCTATATGGCCGGGGCCAAACCCCAGCTCCTTCTGAGCAAGACACAAAGGCATCGTGTCACGATACTTGTATACCACCAAGACCACGAGCTTTCAGTGCTCAATCTCTGATGTCAGCATCATCATCTCAGGGTGGTCATCATCAGTATCTTCCTTTTCACTGTCCTCGTTACAGTCCTCAACATTTCAGTTCGCCTCCGTACCAAAGGGATGAGGATTCCTCATCACAAGTGCTCAATCTCAGCACCACTCTTACACCTCAAGGATTTCACCATCATGTGGCTGGGATGGTTTATGCCAGAGTGTTTGGCAACCCGGAAAATCTATACGCCTACCGGAATTCTTATCAGCAGATGGGCAGTAACAGCCCGAGACTGAGAAGACAGGAGATGCAAGCAGATAAGTCATTAAACAGAATCTCATTTTTCCTCTTTTGCTGTTTTGTTTTATGTCTCATCGTCTTTTGA 729 0.4678 MAFERYISQEWKSTPSSVMTETGNYNGCFDCNICLDFALEPVVTLCGHLYCWPCIFKWLHVQSSSLASHEHPQCPVCRADISLATMVPLYGRGQTPAPSEQDTKASCHDTCIPPRPRAFSAQSLMSASSSQGGHHQYLPFHCPRYSPQHFSSPPYQRDEDSSSQVLNLSTTLTPQGFHHHVAGMVYARVFGNPENLYAYRNSYQQMGSNSPRLRRQEMQADKSLNRISFFLFCCFVLCLIVF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0996 242 SMART ring_2 31 77 IPR001841 -
Prci3g0996 242 SUPERFAMILY RING/U-box 27 90 - -
Prci3g0996 242 ProSiteProfiles Zinc finger RING-type profile. 31 78 IPR001841 -
Prci3g0996 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 239 IPR045103 GO:0005783|GO:0006511|GO:0061630
Prci3g0996 242 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Prci3g0996 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 92 IPR013083 -
Prci3g0996 242 Pfam Zinc finger, C3HC4 type (RING finger) 31 77 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0996 Prci-Chr3 12812042 12815880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0996 6 228 C3H Transcription Factor Family AT4G27470 38.197 2.07e-42 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0996 K10666 - qsa:O6P43_031837 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g0996 3 12812042 12815880 Prci3g0996 3 12812042 12815880 ECH