Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0995 ATGGCAGAAAGATCGACGAAGCTCAAGCTCAACAACAACACGGCCGCTGCGGCCTCCTCGGCCTCCGGCAGCGGCAGCGGCCAGTCACCGAGGGGGCGGTGCGTGGCGCCGTTTCTGGTGAAGACGTATGATTTGGTGGAAGAAGGCGGAGAAGCAGAAGAGAGGAAGAGATCGGTGGTGACGTGGAACGAGGAAGGAGATGGTTTTGTTGTGTGGCGTCCAGCAGAATTCTCAGAGATGATCTTGCCCAGATACTTCAAGCACAATAACTTCTCTAGTTTCATCCGCCAATTGAACACCTACGGATTTAAGAAAGTATCATCAAAGAGATGGGAATTCAAGCAGGAGAAATTTCAGAGGGGTTGCAAGAAGTTGCTGGCGGAGATCACGAGGAAGAAGTGCGAGCCGAGTGTGTTCCCTTCGTACTTGAAGTCTTCTTCAGAGGAAAGCAATAATAATCAAGAATTGCGAAATGAGGAATTGATGGTGCAGGAGAACCAAGACCTGAAGAAGCAGAACCAGCATCTGCAATCACAGATTGCTCACTTCAAACAATTACAAACCAGGCTTTTGCAATGCCTCTCTCACTATATGCCCCAATCTAGTTAA 609 0.491 MAERSTKLKLNNNTAAAASSASGSGSGQSPRGRCVAPFLVKTYDLVEEGGEAEERKRSVVTWNEEGDGFVVWRPAEFSEMILPRYFKHNNFSSFIRQLNTYGFKKVSSKRWEFKQEKFQRGCKKLLAEITRKKCEPSVFPSYLKSSSEESNNNQELRNEELMVQENQDLKKQNQHLQSQIAHFKQLQTRLLQCLSHYMPQSS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0995 202 Gene3D - 31 133 IPR036388 -
Prci3g0995 202 Coils Coil 159 186 - -
Prci3g0995 202 Pfam HSF-type DNA-binding 38 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g0995 202 SUPERFAMILY "Winged helix" DNA-binding domain 35 132 IPR036390 -
Prci3g0995 202 SMART hsfneu3 34 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci3g0995 202 MobiDBLite consensus disorder prediction 1 32 - -
Prci3g0995 202 FunFam Heat stress transcription factor A-6b 31 133 - -
Prci3g0995 202 MobiDBLite consensus disorder prediction 1 29 - -
Prci3g0995 202 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 26 194 IPR027725 -
Prci3g0995 202 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0995 Prci-Chr3 12791105 12794849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0995 26 198 HSF AT5G62020 36.408 1.12e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci3g0995 HSF_DNA-bind 5.2e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0995 K09419 - qsa:O6P43_031835 247.284