Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0968 ATGGAAGACAATCAAGTTACAGATCCAAGAGGGAATCTAGGTCTCGCTCCAGATCCCCTTCTCATTCAGAAAGCAAAAGGATCAGTGGCTTTGACATGGCACCACCTACTGTTGCTGGAGTACCTGCTGTTTCAGAAGGCAATGTTGGGCTGCATGCGCTATCAGCATACACCCTGTAGCATATTCAATGGACGGCCCATGCCTTTGGTAGCTGGACCTTTCACCTTCAACCGGCAAAAGTTGCCAATTGTTGATAGTGCAGGGCAAATGCTGGGGATCACTCATCCAGTTACTCTGCAAAATGTGCCTTCAGTTGGGATGTCGCAGGTGGGAGCTTTTTCCTTGATGTCAGTTCAACCTATGATGCAGCAGGCTACAAGGCATGCACGACGAGTTTATGTTGGTGGGCTTCCCCCATTGACCAATGAGCAGGCAGTGGCAGCATTCTTCAGTCAAGTTATGGTAGCTATTGGAGGGAATTCTGCCGGTGCAGGTGATTCCGTTGTAAATGTTTACATTAATCATGAGAAGAAATTTGCCTTTGTGGAGATGAGAACTGTTGAAGAAGCCAGCAATGCAATGGCATTAGATGGAATCATATTTGAGGGAGTTGCTGTGCGGGTTCGTAGGCCCACAGACTATAATCCTGCAGTAGCTGCTGCTCTAGGTCCTAGCCAACCAAGTCCAAACCTTAACTTATCTGCTGTTGGGCTTGTTGCAGGTGCAATTGGTGGAGCTGAGGGACCTGACCGCATCTTCGTTGGTGGGCTGCCATATTACTTTACTGAAGAACAAATAAAAGACTTGCTCCAATCTTTTGGACCTCTCAGAGCTTTTGATCTAGTTAGAGATAAAGACACCGGAAATTCTAAAGGGTATGGTTTCTGCTTCTATCAGGATCCAGCTGTAACGGACATTGCTTGTGCCTCATTGAATGGCCTTAAAATGGGTGACAAAACACTGACTGTTCGGCGTGCCACTGTCTGTGTACAGTCTAAAACAGAACAGGATCATATCTTTGCACAGGCACAACAGCATATCGCCATGCAGAAAGTAGTCTTGGAGGCTGGCGGGGTAAATATTCTAGGAGTGGAAAGAGCACTAACCAAGCATGATGAAAATGCTACCAAAGTTTTATGCTTAACAGAGGCCATTACTGCTGATCAACTGAGGGATGATGGAGAATATGAAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGATAAATGTGGTTATCCCACGTCCAAATGGCATTGGAGAGGCTTCCCCGGGTGTTGGAAAGGTGTTCTTGGAATATTCCGATAGTTCTGGAAGTTTCACTGCGAAAAATGCGCTGAATGGGAGGAAATTCGGAGGCAATGTTGTGAGTGCCTTCTATTACTCCGAAGAAAAATATCATAGCTCGCAGTATGATGATGTATAA 1440 0.4583 MEDNQVTDPRGNLGLAPDPLLIQKAKGSVALTWHHLLLLEYLLFQKAMLGCMRYQHTPCSIFNGRPMPLVAGPFTFNRQKLPIVDSAGQMLGITHPVTLQNVPSVGMSQVGAFSLMSVQPMMQQATRHARRVYVGGLPPLTNEQAVAAFFSQVMVAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPAVAAALGPSQPSPNLNLSAVGLVAGAIGGAEGPDRIFVGGLPYYFTEEQIKDLLQSFGPLRAFDLVRDKDTGNSKGYGFCFYQDPAVTDIACASLNGLKMGDKTLTVRRATVCVQSKTEQDHIFAQAQQHIAMQKVVLEAGGVNILGVERALTKHDENATKVLCLTEAITADQLRDDGEYEEILEDMRDECCKFGTLINVVIPRPNGIGEASPGVGKVFLEYSDSSGSFTAKNALNGRKFGGNVVSAFYYSEEKYHSSQYDDV 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0968 479 Gene3D - 125 226 IPR012677 -
Prci3g0968 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 321 IPR000504 GO:0003723
Prci3g0968 479 CDD RRM1_U2AF65 129 211 - -
Prci3g0968 479 Gene3D - 244 346 IPR012677 -
Prci3g0968 479 PANTHER RNA-BINDING PROTEIN 97 476 - -
Prci3g0968 479 SUPERFAMILY RNA-binding domain, RBD 251 470 IPR035979 GO:0003676
Prci3g0968 479 SMART rrm1_1 131 209 IPR000504 GO:0003723
Prci3g0968 479 SMART rrm1_1 251 324 IPR000504 GO:0003723
Prci3g0968 479 FunFam U2 snRNP auxiliary factor large subunit 227 339 - -
Prci3g0968 479 Gene3D - 372 477 IPR012677 -
Prci3g0968 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 328 IPR000504 GO:0003723
Prci3g0968 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 213 IPR000504 GO:0003723
Prci3g0968 479 FunFam U2 snRNP auxiliary factor large subunit 373 477 - -
Prci3g0968 479 CDD RRM2_U2AF65 250 326 - -
Prci3g0968 479 SUPERFAMILY RNA-binding domain, RBD 130 215 IPR035979 GO:0003676
Prci3g0968 479 FunFam U2 snRNP auxiliary factor large subunit 125 226 - -
Prci3g0968 479 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 108 476 IPR006529 GO:0003723|GO:0005634|GO:0006397
Prci3g0968 479 CDD RRM3_U2AF65 376 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0968 Prci-Chr3 12486068 12497962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0968 252 344 Eukaryotic Initiation Factors Gene Family AT1G71770 25.806 7.43e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0968 K12837 - qsa:O6P43_031823 595.504