Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0967 ATGGAAGACAATCAAGTTACAGATCCAAGAGGGAATCTAGGTCTCGCTCCAGATCCCCTTCTCATTCAGAAAGCAAAAGGATCAGTGGCTTTGACATGGCACCACCTACTGTTGCTGGAGTACCTGCTGTTTCAGAAGGCAATGTTGGGCTGCATGCGCTATCAGCATACACCCTGTAGCATATTCAATGGACGGCCCATGCCTTTGGTAGCTGGACCTTTCACCTTCAACCGGCAAAAGTTGCCAATTGGGCAAATGCTGGGGATCACTCATCCAGTTACTCTGCAAAATGTGCCTTCAGTTGGGATGTCGCAGGTGGGAGCTTTTTCCTTGATGTCAGTTCAACCTATGATGCAGCAGGCTACAAGGCATGCACGACGAGTTTATGTTGGTGGGCTTCCCCCATTGACCAATGAGCAGGCAGTGGCAGCATTCTTCAGTCAAGTTATGGTAGCTATTGGAGGGAATTCTGCCGGTGCAGGTGATTCCGTTGTAAATGTTTACATTAATCATGAGAAGAAATTTGCCTTTGTGGAGATGAGAACTGTTGAAGAAGCCAGCAATGCAATGGCATTAGATGGAATCATATTTGAGGGAGTTGCTGTGCGGGTTCGTAGGCCCACAGACTATAATCCTGCAGTAGCTGCTGCTCTAGGTCCTAGCCAACCAAGTCCAAACCTTAACTTATCTGCTGTTGGGCTTGTTGCAGGTGCAATTGGTGGAGCTGAGGGACCTGACCGCATCTTCGTTGGTGGGCTGCCATATTACTTTACTGAAGAACAAATAAAAGACTTGCTCCAATCTTTTGGACCTCTCAGAGCTTTTGATCTAGTTAGAGATAAAGACACCGGAAATTCTAAAGGGTATGGTTTCTGCTTCTATCAGGATCCAGCTGTAACGGACATTGCTTGTGCCTCATTGAATGGCCTTAAAATGGGTGACAAAACACTGACTGTTCGGCGTGCCACTGTCTGTGTACAGTCTAAAACAGAACAGGATCATATCTTTGCACAGGCACAACAGCATATCGCCATGCAGAAAGTAGTCTTGGAGGCTGGCGGGGTAAATATTCTAGGAGTGGAAAGAGCACTAACCAAGCATGATGAAAATGCTACCAAAGTTTTATGCTTAACAGAGGCCATTACTGCTGATCAACTGAGGGATGATGGAGAATATGAAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGATAAATGTGGTTATCCCACGTCCAAATGGCATTGGAGAGGCTTCCCCGGGTGTTGGAAAGGTGTTCTTGGAATATTCCGATAGTTCTGGAAGTTTCACTGCGAAAAATGCGCTGAATGGGAGGAAATTCGGAGGCAATGTTGTGAGTGCCTTCTATTACTCCGAAGAAAAATATCATAGCTCGCAGTATGATGATGTATAA 1428 0.4587 MEDNQVTDPRGNLGLAPDPLLIQKAKGSVALTWHHLLLLEYLLFQKAMLGCMRYQHTPCSIFNGRPMPLVAGPFTFNRQKLPIGQMLGITHPVTLQNVPSVGMSQVGAFSLMSVQPMMQQATRHARRVYVGGLPPLTNEQAVAAFFSQVMVAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPAVAAALGPSQPSPNLNLSAVGLVAGAIGGAEGPDRIFVGGLPYYFTEEQIKDLLQSFGPLRAFDLVRDKDTGNSKGYGFCFYQDPAVTDIACASLNGLKMGDKTLTVRRATVCVQSKTEQDHIFAQAQQHIAMQKVVLEAGGVNILGVERALTKHDENATKVLCLTEAITADQLRDDGEYEEILEDMRDECCKFGTLINVVIPRPNGIGEASPGVGKVFLEYSDSSGSFTAKNALNGRKFGGNVVSAFYYSEEKYHSSQYDDV 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0967 475 Gene3D - 121 222 IPR012677 -
Prci3g0967 475 SMART rrm1_1 127 205 IPR000504 GO:0003723
Prci3g0967 475 SMART rrm1_1 247 320 IPR000504 GO:0003723
Prci3g0967 475 SUPERFAMILY RNA-binding domain, RBD 247 466 IPR035979 GO:0003676
Prci3g0967 475 CDD RRM1_U2AF65 125 207 - -
Prci3g0967 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 246 324 IPR000504 GO:0003723
Prci3g0967 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 209 IPR000504 GO:0003723
Prci3g0967 475 PANTHER RNA-BINDING PROTEIN 94 472 - -
Prci3g0967 475 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 105 472 IPR006529 GO:0003723|GO:0005634|GO:0006397
Prci3g0967 475 CDD RRM2_U2AF65 246 322 - -
Prci3g0967 475 FunFam U2 snRNP auxiliary factor large subunit 121 222 - -
Prci3g0967 475 FunFam U2 snRNP auxiliary factor large subunit 223 335 - -
Prci3g0967 475 CDD RRM3_U2AF65 372 459 - -
Prci3g0967 475 Gene3D - 368 473 IPR012677 -
Prci3g0967 475 SUPERFAMILY RNA-binding domain, RBD 126 211 IPR035979 GO:0003676
Prci3g0967 475 Gene3D - 240 342 IPR012677 -
Prci3g0967 475 FunFam U2 snRNP auxiliary factor large subunit 369 473 - -
Prci3g0967 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 248 317 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0967 Prci-Chr3 12486068 12497962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0967 248 340 Eukaryotic Initiation Factors Gene Family AT1G71770 25.806 7.08e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0967 K12837 - qsa:O6P43_031823 595.504