Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0966 ATGGAAGACAATCAAGTTACAGATCCAAGAGGGAATCTAGGTCTCGCTCCAGATCCCCTTCTCATTCAGAAAGCAAAAGGATCAGTGGCTTTGACATGGCACCACCTACTGTTGCTGGAGTACCTGCTGTTTCAGGCAATGTTGGGCTGCATGCGCTATCAGCATACACCCTGTAGCATATTCAATGGACGGCCCATGCCTTTGGTAGCTGGACCTTTCACCTTCAACCGGCAAAAGTTGCCAATTGTTGATAGTGCAGGGCAAATGCTGGGGATCACTCATCCAGTTACTCTGCAAAATGTGCCTTCAGTTGGGATGTCGCAGGTGGGAGCTTTTTCCTTGATGTCAGTTCAACCTATGATGCAGCAGGCTACAAGGCATGCACGACGAGTTTATGTTGGTGGGCTTCCCCCATTGACCAATGAGCAGGCAGTGGCAGCATTCTTCAGTCAAGTTATGGTAGCTATTGGAGGGAATTCTGCCGGTGCAGGTGATTCCGTTGTAAATGTTTACATTAATCATGAGAAGAAATTTGCCTTTGTGGAGATGAGAACTGTTGAAGAAGCCAGCAATGCAATGGCATTAGATGGAATCATATTTGAGGGAGTTGCTGTGCGGGTTCGTAGGCCCACAGACTATAATCCTGCAGTAGCTGCTGCTCTAGGTCCTAGCCAACCAAGTCCAAACCTTAACTTATCTGCTGTTGGGCTTGTTGCAGGTGCAATTGGTGGAGCTGAGGGACCTGACCGCATCTTCGTTGGTGGGCTGCCATATTACTTTACTGAAGAACAAATAAAAGACTTGCTCCAATCTTTTGGACCTCTCAGAGCTTTTGATCTAGTTAGAGATAAAGACACCGGAAATTCTAAAGGGTATGGTTTCTGCTTCTATCAGGATCCAGCTGTAACGGACATTGCTTGTGCCTCATTGAATGGCCTTAAAATGGGTGACAAAACACTGACTGTTCGGCGTGCCACTGTCTGTGTACAGTCTAAAACAGAACAGGATCATATCTTTGCACAGGCACAACAGCATATCGCCATGCAGAAAGTAGTCTTGGAGGCTGGCGGGGTAAATATTCTAGGAGTGGAAAGAGCACTAACCAAGCATGATGAAAATGCTACCAAAGTTTTATGCTTAACAGAGGCCATTACTGCTGATCAACTGAGGGATGATGGAGAATATGAAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGATAAATGTGGTTATCCCACGTCCAAATGGCATTGGAGAGGCTTCCCCGGGTGTTGGAAAGGTGTTCTTGGAATATTCCGATAGTTCTGGAAGTTTCACTGCGAAAAATGCGCTGAATGGGAGGAAATTCGGAGGCAATGTTGTGAGTGCCTTCTATTACTCCGAAGAAAAATATCATAGCTCGCAGTATGATGATGTATAA 1437 0.4586 MEDNQVTDPRGNLGLAPDPLLIQKAKGSVALTWHHLLLLEYLLFQAMLGCMRYQHTPCSIFNGRPMPLVAGPFTFNRQKLPIVDSAGQMLGITHPVTLQNVPSVGMSQVGAFSLMSVQPMMQQATRHARRVYVGGLPPLTNEQAVAAFFSQVMVAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPAVAAALGPSQPSPNLNLSAVGLVAGAIGGAEGPDRIFVGGLPYYFTEEQIKDLLQSFGPLRAFDLVRDKDTGNSKGYGFCFYQDPAVTDIACASLNGLKMGDKTLTVRRATVCVQSKTEQDHIFAQAQQHIAMQKVVLEAGGVNILGVERALTKHDENATKVLCLTEAITADQLRDDGEYEEILEDMRDECCKFGTLINVVIPRPNGIGEASPGVGKVFLEYSDSSGSFTAKNALNGRKFGGNVVSAFYYSEEKYHSSQYDDV 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0966 478 FunFam U2 snRNP auxiliary factor large subunit 372 476 - -
Prci3g0966 478 CDD RRM3_U2AF65 375 462 - -
Prci3g0966 478 FunFam U2 snRNP auxiliary factor large subunit 226 338 - -
Prci3g0966 478 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 107 475 IPR006529 GO:0003723|GO:0005634|GO:0006397
Prci3g0966 478 SUPERFAMILY RNA-binding domain, RBD 129 214 IPR035979 GO:0003676
Prci3g0966 478 FunFam U2 snRNP auxiliary factor large subunit 124 225 - -
Prci3g0966 478 Gene3D - 243 345 IPR012677 -
Prci3g0966 478 CDD RRM2_U2AF65 249 325 - -
Prci3g0966 478 SUPERFAMILY RNA-binding domain, RBD 250 469 IPR035979 GO:0003676
Prci3g0966 478 CDD RRM1_U2AF65 128 210 - -
Prci3g0966 478 SMART rrm1_1 130 208 IPR000504 GO:0003723
Prci3g0966 478 SMART rrm1_1 250 323 IPR000504 GO:0003723
Prci3g0966 478 Gene3D - 371 476 IPR012677 -
Prci3g0966 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 320 IPR000504 GO:0003723
Prci3g0966 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 327 IPR000504 GO:0003723
Prci3g0966 478 PANTHER RNA-BINDING PROTEIN 96 475 - -
Prci3g0966 478 Gene3D - 124 225 IPR012677 -
Prci3g0966 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 212 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0966 Prci-Chr3 12486068 12497962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0966 251 343 Eukaryotic Initiation Factors Gene Family AT1G71770 25.806 7.09e-07 50.1