Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0965 ATGGAAGACAATCAAGTTACAGATCCAAGAGGGAATCTAGGTCTCGCTCCAGATCCCCTTCTCATTCAGAAAGCAAAAGGATCAGTGGCTTTGACATGGCACCACCTACTGTTGCTGGAGTACCTGCTGTTTCAGGCAATGTTGGGCTGCATGCGCTATCAGCATACACCCTGTAGCATATTCAATGGACGGCCCATGCCTTTGGTAGCTGGACCTTTCACCTTCAACCGGCAAAAGTTGCCAATTGGGCAAATGCTGGGGATCACTCATCCAGTTACTCTGCAAAATGTGCCTTCAGTTGGGATGTCGCAGGTGGGAGCTTTTTCCTTGATGTCAGTTCAACCTATGATGCAGCAGGCTACAAGGCATGCACGACGAGTTTATGTTGGTGGGCTTCCCCCATTGACCAATGAGCAGGCAGTGGCAGCATTCTTCAGTCAAGTTATGGTAGCTATTGGAGGGAATTCTGCCGGTGCAGGTGATTCCGTTGTAAATGTTTACATTAATCATGAGAAGAAATTTGCCTTTGTGGAGATGAGAACTGTTGAAGAAGCCAGCAATGCAATGGCATTAGATGGAATCATATTTGAGGGAGTTGCTGTGCGGGTTCGTAGGCCCACAGACTATAATCCTGCAGTAGCTGCTGCTCTAGGTCCTAGCCAACCAAGTCCAAACCTTAACTTATCTGCTGTTGGGCTTGTTGCAGGTGCAATTGGTGGAGCTGAGGGACCTGACCGCATCTTCGTTGGTGGGCTGCCATATTACTTTACTGAAGAACAAATAAAAGACTTGCTCCAATCTTTTGGACCTCTCAGAGCTTTTGATCTAGTTAGAGATAAAGACACCGGAAATTCTAAAGGGTATGGTTTCTGCTTCTATCAGGATCCAGCTGTAACGGACATTGCTTGTGCCTCATTGAATGGCCTTAAAATGGGTGACAAAACACTGACTGTTCGGCGTGCCACTGTCTGTGTACAGTCTAAAACAGAACAGGATCATATCTTTGCACAGGCACAACAGCATATCGCCATGCAGAAAGTAGTCTTGGAGGCTGGCGGGGTAAATATTCTAGGAGTGGAAAGAGCACTAACCAAGCATGATGAAAATGCTACCAAAGTTTTATGCTTAACAGAGGCCATTACTGCTGATCAACTGAGGGATGATGGAGAATATGAAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGATAAATGTGGTTATCCCACGTCCAAATGGCATTGGAGAGGCTTCCCCGGGTGTTGGAAAGGTGTTCTTGGAATATTCCGATAGTTCTGGAAGTTTCACTGCGAAAAATGCGCTGAATGGGAGGAAATTCGGAGGCAATGTTGTGAGTGCCTTCTATTACTCCGAAGAAAAATATCATAGCTCGCAGTATGATGATGTATAA 1425 0.4589 MEDNQVTDPRGNLGLAPDPLLIQKAKGSVALTWHHLLLLEYLLFQAMLGCMRYQHTPCSIFNGRPMPLVAGPFTFNRQKLPIGQMLGITHPVTLQNVPSVGMSQVGAFSLMSVQPMMQQATRHARRVYVGGLPPLTNEQAVAAFFSQVMVAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPAVAAALGPSQPSPNLNLSAVGLVAGAIGGAEGPDRIFVGGLPYYFTEEQIKDLLQSFGPLRAFDLVRDKDTGNSKGYGFCFYQDPAVTDIACASLNGLKMGDKTLTVRRATVCVQSKTEQDHIFAQAQQHIAMQKVVLEAGGVNILGVERALTKHDENATKVLCLTEAITADQLRDDGEYEEILEDMRDECCKFGTLINVVIPRPNGIGEASPGVGKVFLEYSDSSGSFTAKNALNGRKFGGNVVSAFYYSEEKYHSSQYDDV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0965 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 208 IPR000504 GO:0003723
Prci3g0965 474 SUPERFAMILY RNA-binding domain, RBD 246 465 IPR035979 GO:0003676
Prci3g0965 474 CDD RRM3_U2AF65 371 458 - -
Prci3g0965 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 323 IPR000504 GO:0003723
Prci3g0965 474 FunFam U2 snRNP auxiliary factor large subunit 368 472 - -
Prci3g0965 474 CDD RRM2_U2AF65 245 321 - -
Prci3g0965 474 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 104 471 IPR006529 GO:0003723|GO:0005634|GO:0006397
Prci3g0965 474 SMART rrm1_1 246 319 IPR000504 GO:0003723
Prci3g0965 474 SMART rrm1_1 126 204 IPR000504 GO:0003723
Prci3g0965 474 SUPERFAMILY RNA-binding domain, RBD 125 210 IPR035979 GO:0003676
Prci3g0965 474 CDD RRM1_U2AF65 124 206 - -
Prci3g0965 474 FunFam U2 snRNP auxiliary factor large subunit 120 221 - -
Prci3g0965 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 316 IPR000504 GO:0003723
Prci3g0965 474 Gene3D - 239 341 IPR012677 -
Prci3g0965 474 Gene3D - 367 472 IPR012677 -
Prci3g0965 474 PANTHER RNA-BINDING PROTEIN 93 471 - -
Prci3g0965 474 FunFam U2 snRNP auxiliary factor large subunit 222 334 - -
Prci3g0965 474 Gene3D - 120 221 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0965 Prci-Chr3 12486068 12497962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0965 247 339 Eukaryotic Initiation Factors Gene Family AT1G71770 25.806 6.58e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0965 K12837 - qsa:O6P43_031823 595.504