Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0964 ATGTCTGACGCTGAAAATCAAACCTCTTTGAAAAATGACGATCGTCGTGGTTCAAAGCCTGACAGGGGCCACCGCGACAAGCCCAATTCTCATGGATCTGATCAAGAAAGGCTAAGGATGAGAAAACGAGATGGAGAGAGGAAAACTGATCATGTGCAACATCACAAGGACTTTAAAAACGGAGGCTTCAGAAGGAGAAGCAGTTATGAAAGTTATAATCGTCATCAGAACTGTGATTATGACAGGCATCGAGATCATGTTCGAGATGGAGAAATGAGGCACAGATATGGAAGACAATCAAGTTACAGATCCAAGAGGGAATCTAGGTCTCGCTCCAGATCCCCTTCTCATTCAGAAAGCAAAAGGATCAGTGGCTTTGACATGGCACCACCTACTGTTGCTGGAGTACCTGCTGTTTCAGTTGATAGTGCAGGGCAAATGCTGGGGATCACTCATCCAGTTACTCTGCAAAATGTGCCTTCAGTTGGGATGTCGCAGGTGGGAGCTTTTTCCTTGATGTCAGTTCAACCTATGATGCAGCAGGCTACAAGGCATGCACGACGAGTTTATGTTGGTGGGCTTCCCCCATTGACCAATGAGCAGGCAGTGGCAGCATTCTTCAGTCAAGTTATGGTAGCTATTGGAGGGAATTCTGCCGGTGCAGGTGATTCCGTTGTAAATGTTTACATTAATCATGAGAAGAAATTTGCCTTTGTGGAGATGAGAACTGTTGAAGAAGCCAGCAATGCAATGGCATTAGATGGAATCATATTTGAGGGAGTTGCTGTGCGGGTTCGTAGGCCCACAGACTATAATCCTGCAGTAGCTGCTGCTCTAGGTCCTAGCCAACCAAGTCCAAACCTTAACTTATCTGCTGTTGGGCTTGTTGCAGGTGCAATTGGTGGAGCTGAGGGACCTGACCGCATCTTCGTTGGTGGGCTGCCATATTACTTTACTGAAGAACAAATAAAAGACTTGCTCCAATCTTTTGGACCTCTCAGAGCTTTTGATCTAGTTAGAGATAAAGACACCGGAAATTCTAAAGGGTATGGTTTCTGCTTCTATCAGGATCCAGCTGTAACGGACATTGCTTGTGCCTCATTGAATGGCCTTAAAATGGGTGACAAAACACTGACTGTTCGGCGTGCCACTGTCTGTGTACAGTCTAAAACAGAACAGGATCATATCTTTGCACAGGCACAACAGCATATCGCCATGCAGAAAGTAGTCTTGGAGGCTGGCGGGGTAAATATTCTAGGAGTGGAAAGAGCACTAACCAAGCATGATGAAAATGCTACCAAAGTTTTATGCTTAACAGAGGCCATTACTGCTGATCAACTGAGGGATGATGGAGAATATGAAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGATAAATGTGGTTATCCCACGTCCAAATGGCATTGGAGAGGCTTCCCCGGGTGTTGGAAAGGTGTTCTTGGAATATTCCGATAGTTCTGGAAGTTTCACTGCGAAAAATGCGCTGAATGGGAGGAAATTCGGAGGCAATGTTGTGAGTGCCTTCTATTACTCCGAAGAAAAATATCATAGCTCGCAGTATGATGATGTATAA 1611 0.4513 MSDAENQTSLKNDDRRGSKPDRGHRDKPNSHGSDQERLRMRKRDGERKTDHVQHHKDFKNGGFRRRSSYESYNRHQNCDYDRHRDHVRDGEMRHRYGRQSSYRSKRESRSRSRSPSHSESKRISGFDMAPPTVAGVPAVSVDSAGQMLGITHPVTLQNVPSVGMSQVGAFSLMSVQPMMQQATRHARRVYVGGLPPLTNEQAVAAFFSQVMVAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPAVAAALGPSQPSPNLNLSAVGLVAGAIGGAEGPDRIFVGGLPYYFTEEQIKDLLQSFGPLRAFDLVRDKDTGNSKGYGFCFYQDPAVTDIACASLNGLKMGDKTLTVRRATVCVQSKTEQDHIFAQAQQHIAMQKVVLEAGGVNILGVERALTKHDENATKVLCLTEAITADQLRDDGEYEEILEDMRDECCKFGTLINVVIPRPNGIGEASPGVGKVFLEYSDSSGSFTAKNALNGRKFGGNVVSAFYYSEEKYHSSQYDDV 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0964 536 CDD RRM1_U2AF65 186 268 - -
Prci3g0964 536 Gene3D - 429 534 IPR012677 -
Prci3g0964 536 FunFam U2 snRNP auxiliary factor large subunit 430 534 - -
Prci3g0964 536 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 25 533 IPR006529 GO:0003723|GO:0005634|GO:0006397
Prci3g0964 536 SMART rrm1_1 308 381 IPR000504 GO:0003723
Prci3g0964 536 SMART rrm1_1 188 266 IPR000504 GO:0003723
Prci3g0964 536 CDD RRM3_U2AF65 433 520 - -
Prci3g0964 536 SUPERFAMILY RNA-binding domain, RBD 308 527 IPR035979 GO:0003676
Prci3g0964 536 CDD RRM2_U2AF65 307 383 - -
Prci3g0964 536 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 378 IPR000504 GO:0003723
Prci3g0964 536 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 385 IPR000504 GO:0003723
Prci3g0964 536 Gene3D - 182 283 IPR012677 -
Prci3g0964 536 FunFam U2 snRNP auxiliary factor large subunit 284 396 - -
Prci3g0964 536 MobiDBLite consensus disorder prediction 1 129 - -
Prci3g0964 536 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 270 IPR000504 GO:0003723
Prci3g0964 536 Gene3D - 301 403 IPR012677 -
Prci3g0964 536 FunFam U2 snRNP auxiliary factor large subunit 182 283 - -
Prci3g0964 536 PANTHER RNA-BINDING PROTEIN 14 533 - -
Prci3g0964 536 MobiDBLite consensus disorder prediction 8 120 - -
Prci3g0964 536 SUPERFAMILY RNA-binding domain, RBD 71 267 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0964 Prci-Chr3 12486068 12499328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0964 309 383 Eukaryotic Initiation Factors Gene Family AT1G71770 28.000 2.87e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0964 K12837 - qsa:O6P43_031823 685.256