Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0963 ATGTCTGACGCTGAAAATCAAACCTCTTTGAAAAATGACGATCGTCGTGGTTCAAAGCCTGACAGGGGCCACCGCGACAAGCCCAATTCTCATGGATCTGATCAAGAAAGGCTAAGGATGAGAAAACGAGATGGAGAGAGGAAAACTGATCATGTGCAACATCACAAGGACTTTAAAAACGGAGGCTTCAGAAGGAGAAGCAGTTATGAAAGTTATAATCGTCATCAGAACTGTGATTATGACAGGCATCGAGATCATGTTCGAGATGGAGAAATGAGGCACAGATATGGAAGACAATCAAGTTACAGATCCAAGAGGGAATCTAGGTCTCGCTCCAGATCCCCTTCTCATTCAGAAAGCAAAAGGATCAGTGGCTTTGACATGGCACCACCTACTGTTGCTGGAGTACCTGCTGTTTCAGGGCAAATGCTGGGGATCACTCATCCAGTTACTCTGCAAAATGTGCCTTCAGTTGGGATGTCGCAGGTGGGAGCTTTTTCCTTGATGTCAGTTCAACCTATGATGCAGCAGGCTACAAGGCATGCACGACGAGTTTATGTTGGTGGGCTTCCCCCATTGACCAATGAGCAGGCAGTGGCAGCATTCTTCAGTCAAGTTATGGTAGCTATTGGAGGGAATTCTGCCGGTGCAGGTGATTCCGTTGTAAATGTTTACATTAATCATGAGAAGAAATTTGCCTTTGTGGAGATGAGAACTGTTGAAGAAGCCAGCAATGCAATGGCATTAGATGGAATCATATTTGAGGGAGTTGCTGTGCGGGTTCGTAGGCCCACAGACTATAATCCTGCAGTAGCTGCTGCTCTAGGTCCTAGCCAACCAAGTCCAAACCTTAACTTATCTGCTGTTGGGCTTGTTGCAGGTGCAATTGGTGGAGCTGAGGGACCTGACCGCATCTTCGTTGGTGGGCTGCCATATTACTTTACTGAAGAACAAATAAAAGACTTGCTCCAATCTTTTGGACCTCTCAGAGCTTTTGATCTAGTTAGAGATAAAGACACCGGAAATTCTAAAGGGTATGGTTTCTGCTTCTATCAGGATCCAGCTGTAACGGACATTGCTTGTGCCTCATTGAATGGCCTTAAAATGGGTGACAAAACACTGACTGTTCGGCGTGCCACTGTCTGTGTACAGTCTAAAACAGAACAGGATCATATCTTTGCACAGGCACAACAGCATATCGCCATGCAGAAAGTAGTCTTGGAGGCTGGCGGGGTAAATATTCTAGGAGTGGAAAGAGCACTAACCAAGCATGATGAAAATGCTACCAAAGTTTTATGCTTAACAGAGGCCATTACTGCTGATCAACTGAGGGATGATGGAGAATATGAAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGATAAATGTGGTTATCCCACGTCCAAATGGCATTGGAGAGGCTTCCCCGGGTGTTGGAAAGGTGTTCTTGGAATATTCCGATAGTTCTGGAAGTTTCACTGCGAAAAATGCGCTGAATGGGAGGAAATTCGGAGGCAATGTTGTGAGTGCCTTCTATTACTCCGAAGAAAAATATCATAGCTCGCAGTATGATGATGTATAA 1599 0.4515 MSDAENQTSLKNDDRRGSKPDRGHRDKPNSHGSDQERLRMRKRDGERKTDHVQHHKDFKNGGFRRRSSYESYNRHQNCDYDRHRDHVRDGEMRHRYGRQSSYRSKRESRSRSRSPSHSESKRISGFDMAPPTVAGVPAVSGQMLGITHPVTLQNVPSVGMSQVGAFSLMSVQPMMQQATRHARRVYVGGLPPLTNEQAVAAFFSQVMVAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPAVAAALGPSQPSPNLNLSAVGLVAGAIGGAEGPDRIFVGGLPYYFTEEQIKDLLQSFGPLRAFDLVRDKDTGNSKGYGFCFYQDPAVTDIACASLNGLKMGDKTLTVRRATVCVQSKTEQDHIFAQAQQHIAMQKVVLEAGGVNILGVERALTKHDENATKVLCLTEAITADQLRDDGEYEEILEDMRDECCKFGTLINVVIPRPNGIGEASPGVGKVFLEYSDSSGSFTAKNALNGRKFGGNVVSAFYYSEEKYHSSQYDDV 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0963 532 CDD RRM1_U2AF65 182 264 - -
Prci3g0963 532 PANTHER RNA-BINDING PROTEIN 14 529 - -
Prci3g0963 532 CDD RRM3_U2AF65 429 516 - -
Prci3g0963 532 Gene3D - 425 530 IPR012677 -
Prci3g0963 532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 374 IPR000504 GO:0003723
Prci3g0963 532 Gene3D - 178 279 IPR012677 -
Prci3g0963 532 SUPERFAMILY RNA-binding domain, RBD 304 523 IPR035979 GO:0003676
Prci3g0963 532 FunFam U2 snRNP auxiliary factor large subunit 426 530 - -
Prci3g0963 532 FunFam U2 snRNP auxiliary factor large subunit 178 279 - -
Prci3g0963 532 MobiDBLite consensus disorder prediction 1 129 - -
Prci3g0963 532 SUPERFAMILY RNA-binding domain, RBD 71 263 IPR035979 GO:0003676
Prci3g0963 532 FunFam U2 snRNP auxiliary factor large subunit 280 392 - -
Prci3g0963 532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 381 IPR000504 GO:0003723
Prci3g0963 532 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 25 529 IPR006529 GO:0003723|GO:0005634|GO:0006397
Prci3g0963 532 MobiDBLite consensus disorder prediction 8 120 - -
Prci3g0963 532 SMART rrm1_1 184 262 IPR000504 GO:0003723
Prci3g0963 532 SMART rrm1_1 304 377 IPR000504 GO:0003723
Prci3g0963 532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 266 IPR000504 GO:0003723
Prci3g0963 532 CDD RRM2_U2AF65 303 379 - -
Prci3g0963 532 Gene3D - 297 399 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0963 Prci-Chr3 12486068 12499328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0963 305 379 Eukaryotic Initiation Factors Gene Family AT1G71770 28.000 2.91e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0963 K12837 - qsa:O6P43_031823 687.182