Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0921 ATGGCGGACGAGGGGTTCGATTACTATGAACTGGTTGACGGGGATGCTGATGCTGATGATAAGTTGTGTATAGATCTTGACACCGTTATGAATGTCCTTGATGAGGATTATGATCCTTCGGAGAGTAGTCTGGAGGGTTTTTCGTTAAAAAATGTCTCACCTGGCGAATCCAGCATCCAGGATAATTTTCAGCTTCAAAGTGGAAATTCTGTGCTTTACAGTGAGCATGAAAATCAAGGACCTCCTTCTCAGACCTGCTCTTCCTCTCATGCTGTCCCTGACAGTTTTCAGCAGTTGGATCCTCTGGATGCAACTAAAGAAATCGGCTACACAGAAAGGGAAGGAAGTTCGGGATGTGAGATGCCAGCCCAATCTTTGGAACCTCGTGTCCCTGAGCCACATTTCATCAATATATCAGTTTGCGGGGATAATTTGAATTTTAATCCTCTGTGGAAGGAAAAGAATGAGAGCCAACTCAAGCATGCAGGAGAGGATGTTAAATCTGAATATGCTTCATACAGCCCAATCATTGAGAATGGTGATGTAAGTTTTGCACAATATAGGGCTTTTGATGAAGATATGTGCGAAGGAGTTTCTGGGCAACAAGAAACTGACTCATGTACTTCTTTTGAAATATCATTCATGGATGCCAATGGAGGTTCACATATTGCGACACCTACCAATTCTACTATTTGCCAAGGTTCCAATGCTCTTAGTGATTCTCGTGACTGCTTTTCATCGTTGCATGGTTATAAGGGTACAGATGATAGACTTCTACCATCTGACTTGTCTCTTGCTGGTTCTTATTTTCCTAATGTTTTTGGCTCTCAGTGTTGGCCAAATCAAGAATTACTGGATAATGTGAAGGGTGAAAATATGGAATATGTGCCTGACGCCTCACATGTGAGTAACATGCATTCCATTTCTACTGGTAGGATTACTTTTCAAGATAATCAATTTATATCAGGCGATAGTGAATTTTCTTCATTTTTTCTTGGTAATTCATACTTTCCAAATGAAGACCAAGTAGTTTGTGTCAAAGGTGAAAGAGATGAACTGATGGCACCTTACCAGAACCCTTTTTATGAAGATTACTCGGAGTTCAATGGAGGCCAAGAAATGAATGAATTAAATGGCGGCCTACTGATGAATCAGTTAAATAGTGCTTTTCCTTCCATGGGAAATCATAGTTTTAATGTGTTAGAGTGTGAGGATAAAGATGCTGATATATTATCCAACATACATCATCATTATCAAGAGATGGTTGGTGGTACTGACTGTAAATTTCCCAGAGACATAGGTAATTTGAATAGGCAAGCCTTAGACAAGTCTTTGCCCTATGCCCAGACATCAATTGCTAGTGACAAGCAGTTTGGTTATGCCAAGAATGAAGGGGAGGGAAATTTGATTCGTTGTAGGAATTTTGATGCTAACGTTTCAAAAGCTGGCACTGAATTGGTTTGCAGAAGTCTTTTAGAGGGATCCCATGTTGAGGATGATGACTCTGATGTCTGTGTTATTGAAAGCATTAGTCATCCTGCACCTACAAATCGATCAACAGACTATTGGAATTCTCATAAGATATCACAGTACTCAACAAATGGTGATTCACAACCATGCATGTCACGAAGCACAAGGGGAAAGGCCTGTGATGAGCAATATATATTACAAGTTGCACTGCAGGATTTATCTCAGCCAAAGTCAGAAGTTATACCTCCAGACGGATTGATGGCTGTTCCTCTATTAAGACATCAGAGAATTGCTTTGTCATGGATGGTCCAAAAGGAAACATCAAGCTTATACTGCTCAGGGGGAATCCTTGCAGATGATCAGGGACTTGGAAAAACAGTGTCAACCATTGCTTTGATACTGAAGGAAAGACCTCCAACACTAATAGCTTGCCACGGCACACAAAAGGGTGAATTAGAAACTTTGAATCTGGATGTGGATGATGATGTTCTTGCTGAGAGTGGAGTGAAGGAAGACAAGTCTGGTGTATGTCCGATTGAAAACAATAAATTGTTGGTGCAAACAAAGGGAAGGCCTTCTGCAGGAACACTTATTGTTTGTCCCACAAGTGTCCTACGGCAATGGGCTGAAGAGTTGCAAAATAAGGTAACTAGCAAAGCAAATCTGTCTGTGCTAGTGTACCATGGTAGCAGTCGAACCAAAGATCCGTATGTACTGGCCAAGTATGATGTTGTTCTAACGACCTATTCAATTGTCAGCATGGAGGTACCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAGAAAGGAAATTCTGAAGTTCATGCTGGTCTACCACTTAGTAAGAAAAGGAAATGCCCTCCTTCTAGTAAAAGTGGCAAGAAGGGATTAGACCGTGCTTTGCTTGAGGTTTCTGCTCGGCCGTTAGCAAAGGTGGCATGGTTTAGGGTTGTCTTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGCTGGGGTCTTCGTGCAAAGCGAAGATGGTGCTTGTCTGGGACTCCTATCCAGAATGCTATTGATGATCTTTATAGTTATTTTAGATTTCTCAGATATGACCCTTATGCTGTCTATAATACATTCTGTTCTACTATCAAGATTCCAATAAACAGAAGTCCAAACAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACAATAATGTTACGCAGGACGAAAGGCACACTTCTTGATGGTGAGCCTATTATTACACTGCCACCTAAATATGTAAAGCTGAAAAAAGTGGATTTTTCAAGAGAGGAGCGTGATTTCTATTCCAGGCTGGAGGCTGATTCTCGTGCACAATTTCAGGAATATGCTAATGCTGGAACTGTCAAGGAAAATTATGTCAACATTCTGTTGATGCTTTTACGCCTTCGACAAGCTTGTGATCATCCTCTACTTGTTAAGCGCTATAATTCTAACTCTCTATGGAGATCTTCAGTTGAGATGGCAAAGAAACTTCCTTGGGAAAAACGAACATCACTTCTGAATTGTTTGGAGGCTTCATTGGCTCTTTGTGGCATCTGTAATGATCCTCCTGAAGATGCAGTTGTTTCAGCTTGTGGTCATGTTTTTTGTAACCAGTGTATTTGTGAACATCTTACTGGTGATGACAATCAGTGTCCTACTACAAATTGCAAAGCTCAATTGAGTATGTCTTCAGTGTTTTCCAGAGCTACGTTGAACTGTTCTCTTTCTGACCAGGCTAGTGATAGTTTGGTTGGTTGCTCTGGTTCTGAAATGGAGGGTTATGAGCCTTGTTCTCAGAGTCGGCCAATTGATTCTTCAAAAATTAAGGCTGCTCTTGAGGTGTTGAACTCATTGTGCGAGCCACAGGTTAATGCATCAAAAAATATTTCATTGCAGATTAATTCTGATGAGCATAGTGACTTCCATGGGAACTCTGATGCCAATGGGGTGAAATCTTTTGAGGATTTTCCTGGGAGTCAAAAAGTGTCCGATGGAAACTCTAGTGATTCAATTGTTAAAGAGAAAGCAATTGTATTTTCTCAGTGGACAAGGATGTTGGATTTGCTTGAGGCGTGTCTTAAGAATTCTTCAATTCAGTATAGGAGGCTTGATGGCACAATGTCAGTTGTTGCGAGAGATAAAGCTGTTAAAGATTTTAATACTCTCCCCGAGGTAACAGTAATGATTATGTCTTTGAAAGCTGCCAGTCTTGGTCTCAACATGGTAGCTGCCTGTCATGTACTTTTGCTGGACCTCTGGTGGAACCCAACAACTGAAGATCAAGCAATTGACAGAGCACATCGAATTGGGCAAACTCGCCCTGTAACTGTTTTACGGTTGACTGTGAGAGATACAGTTGAAGATCGTATTTTAGCTCTACAGCAAAAGAAGCGAAAGATGGTTGCATCTGCGTTTGGAGAAGACGAAACTGGCGGTCGTCAAAGTCGGCTCACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3978 0.4118 MADEGFDYYELVDGDADADDKLCIDLDTVMNVLDEDYDPSESSLEGFSLKNVSPGESSIQDNFQLQSGNSVLYSEHENQGPPSQTCSSSHAVPDSFQQLDPLDATKEIGYTEREGSSGCEMPAQSLEPRVPEPHFINISVCGDNLNFNPLWKEKNESQLKHAGEDVKSEYASYSPIIENGDVSFAQYRAFDEDMCEGVSGQQETDSCTSFEISFMDANGGSHIATPTNSTICQGSNALSDSRDCFSSLHGYKGTDDRLLPSDLSLAGSYFPNVFGSQCWPNQELLDNVKGENMEYVPDASHVSXNMHSISTGRITFQDNQFISGDSEFSSFFLGNSYFPNEDQVVCVKGERDELMAPYQNPFYEDYSEFNGGQEMNELNGGLLMNQLNSAFPSMGNHSFNVLECEDKDADILSNIHHHYQEMVGGTDCKFPRDIGNLNRQALDKSLPYAQTSIASDKQFGYAKNEGEGNLIRCRNFDANVSKAGTELVCRSLLEGSHVEDDDSDVCVIESISHPAPTNRSTDYWNSHKISQYSTNGDSQPCMSRSTRGKACDEQYILQVALQDLSQPKSEVIPPDGLMAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPTLIACHGTQKGELETLNLDVDDDVLAESGVKEDKSGVCPIENNKLLVQTKGRPSAGTLIVCPTSVLRQWAEELQNKVTSKANLSVLVYHGSSRTKDPYVLAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGNSEVHAGLPLSKKRKCPPSSKSGKKGLDRALLEVSARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYNTFCSTIKIPINRSPNKGYRKLQAVLKTIMLRRTKGTLLDGEPIITLPPKYVKLKKVDFSREERDFYSRLEADSRAQFQEYANAGTVKENYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKKLPWEKRTSLLNCLEASLALCGICNDPPEDAVVSACGHVFCNQCICEHLTGDDNQCPTTNCKAQLSMSSVFSRATLNCSLSDQASDSLVGCSGSEMEGYEPCSQSRPIDSSKIKAALEVLNSLCEPQVNASKNISLQINSDEHSDFHGNSDANGVKSFEDFPGSQKVSDGNSSDSIVKEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVTVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDETGGRQSRLTVDDLKYLFMM 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0921 1326 Pfam SNF2-related domain 602 975 IPR000330 GO:0005524|GO:0140658
Prci3g0921 1326 ProSiteProfiles Zinc finger RING-type profile. 1014 1053 IPR001841 -
Prci3g0921 1326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1007 1063 IPR013083 -
Prci3g0921 1326 MobiDBLite consensus disorder prediction 753 784 - -
Prci3g0921 1326 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 780 910 - -
Prci3g0921 1326 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1164 1321 IPR001650 -
Prci3g0921 1326 SMART ultradead3 578 875 IPR014001 -
Prci3g0921 1326 Pfam Zinc finger, C3HC4 type (RING finger) 1014 1051 - -
Prci3g0921 1326 MobiDBLite consensus disorder prediction 1138 1157 - -
Prci3g0921 1326 MobiDBLite consensus disorder prediction 44 95 - -
Prci3g0921 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 898 IPR027417 -
Prci3g0921 1326 SMART helicmild6 1185 1268 IPR001650 -
Prci3g0921 1326 CDD SF2_C_SNF 1171 1278 - -
Prci3g0921 1326 SMART ring_2 1014 1052 IPR001841 -
Prci3g0921 1326 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 597 860 IPR014001 -
Prci3g0921 1326 SUPERFAMILY RING/U-box 1011 1058 - -
Prci3g0921 1326 Gene3D - 552 642 IPR038718 -
Prci3g0921 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 906 1325 IPR027417 -
Prci3g0921 1326 Gene3D - 1064 1325 IPR027417 -
Prci3g0921 1326 MobiDBLite consensus disorder prediction 36 95 - -
Prci3g0921 1326 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 509 1325 - -
Prci3g0921 1326 Gene3D - 670 757 IPR038718 -
Prci3g0921 1326 Gene3D - 789 910 IPR038718 -
Prci3g0921 1326 Pfam Helicase conserved C-terminal domain 1170 1268 IPR001650 -
Prci3g0921 1326 CDD DEXDc_SHPRH-like 582 898 - -
Prci3g0921 1326 ProSitePatterns Zinc finger RING-type signature. 1029 1038 IPR017907 -
Prci3g0921 1326 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 670 756 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0921 Prci-Chr3 11812296 11822161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0921 465 1325 RAD5 or RAD16-like Gene Family AT1G61140 60.589 0.0 969
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci3g0921 SNF2_N 1.7e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0921 - - lang:109332935 1555.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g0921 3 11812296 11822161 Prci3g0921 3 11812296 11822161 CCT