Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci3g0889 | ATGAACGATCTAATCTCAGGGTCCTTCAAGAAGTACACAGACTTGAAACAGCAGGTGTACCTGGACGATGTGGAGGCAGGGAAGGAGAGTATAAACCTGGACAAGTTCTTCGAGGATGTGGAGAATGTGAAGGAGGACATGAGATTTGTGGAGAAGCTGTACAGGAAATTGCAGGATGCTAATGAGGAGAGCAAGGTTGTGCACAATTCTAAGACCATGAAGGAGCTTCGATCCAGAATGGACAAGGACGTTGAGCAGGTCCTCAAACGGGTCAAGATCATCAAGGGCAAGCTGGAGGCTCTAGAGAGGTCTAATGCTGCCCAGAGGAACGTTCCAGGCTGTGGCCCAGGCTCATCGGCTGATCGGACCCGAACCTCCGTTGTCAGTGGGTTGGGGAAGAAGCTCAAGGACTTGATGGATGACTTTCAGGGGCTCAGAGCCAGGATGCAAGCTGAATACAAGGAAACAATTGAACGCAGGTATTTCACAATCACAGGAGAGAAAGCAGATGAAGATACCATAGAAAACTTGATAGCAAGTGGGGAGAGTGAGAGCTTCTTGCAAAGGGCCATTCAAGAACAGGGGAGGGGTCAGATAATGGACACCATATCAGAGATTCAAGAGAGGCATGATGCTGTGAAGGAGATAGAGAAGAACTTGATTGAGCTGCACCAAGTGTTCTTGGACATGGCGGCTCTGGTGGAGGCTCAGGGCCAGCAGCTCAACAACATAGAGAGCCATGTGGCGCATGCCAGTTCGTTCGTTAGGCGAGGCACCGAGCAGCTTCAGGAGGCCAGAGAGCACCAGAAGGAGTCGAGGAAGTGGACCTGCATTGCCATACTTCTTGGACTTGTCCTCATCATTGTGCTCTTGTTTCCCATCTTGATTCAAATTGTACCTCATTTATTGAGGTAG | 915 | 0.4973 | MNDLISGSFKKYTDLKQQVYLDDVEAGKESINLDKFFEDVENVKEDMRFVEKLYRKLQDANEESKVVHNSKTMKELRSRMDKDVEQVLKRVKIIKGKLEALERSNAAQRNVPGCGPGSSADRTRTSVVSGLGKKLKDLMDDFQGLRARMQAEYKETIERRYFTITGEKADEDTIENLIASGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVEAQGQQLNNIESHVAHASSFVRRGTEQLQEAREHQKESRKWTCIAILLGLVLIIVLLFPILIQIVPHLLR | 304 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci3g0889 | 304 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 30 | 160 | - | - | |
| Prci3g0889 | 304 | SMART | SynN_4 | 28 | 154 | IPR006011 | GO:0016020 | |
| Prci3g0889 | 304 | Coils | Coil | 84 | 104 | - | - | |
| Prci3g0889 | 304 | CDD | SNARE_syntaxin1-like | 202 | 264 | - | - | |
| Prci3g0889 | 304 | Coils | Coil | 40 | 60 | - | - | |
| Prci3g0889 | 304 | ProSitePatterns | Syntaxin / epimorphin family signature. | 209 | 248 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Prci3g0889 | 304 | Gene3D | - | 33 | 160 | - | - | |
| Prci3g0889 | 304 | FunFam | Syntaxin 132 | 196 | 296 | - | - | |
| Prci3g0889 | 304 | CDD | SynN | 33 | 190 | IPR006011 | GO:0016020 | |
| Prci3g0889 | 304 | Gene3D | - | 195 | 298 | - | - | |
| Prci3g0889 | 304 | SUPERFAMILY | t-snare proteins | 32 | 258 | IPR010989 | GO:0016020|GO:0016192 | |
| Prci3g0889 | 304 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - | |
| Prci3g0889 | 304 | PANTHER | SYNTAXIN | 41 | 286 | IPR045242 | - | |
| Prci3g0889 | 304 | Pfam | SNARE domain | 240 | 291 | IPR000727 | - | |
| Prci3g0889 | 304 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - | |
| Prci3g0889 | 304 | Pfam | Syntaxin | 35 | 238 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci3g0889 | Prci-Chr3 | 11367353 | 11369292 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci3g0889 | 1 | 303 | SNARE and Associated Proteins | AT1G61290 | 78.218 | 1.34e-179 | 496 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci3g0889 | K08486 | - | gmx:100818999 | 516.924 |