Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0888 ATGTCCACTGTTGGGTCTTCCTCCTCGTCAAAGGTCTGCTACAATTCGGAGTGCAAAGAATTGAAGTCAGACAGACCTAAGAAGGGTTGGAGACTCCGTACTGGAGAGTTCGCCGAGCTCTGTGATCGATGCGGTTCTGCTTTTGAGGAGGGAAGGTTCTGTGAAATTTATCACTTAAAAGCTTCTGGTTGGAGGACTTGTGAGACATGTGGGAAGGGGATTCATTGTGGGTGTATAGTTTCAAGTACAGCCTTTATGTTGTTGGATCCTGGAGGCATTGAATGCATTGCATGCGCCAGGAAGAATATTATTTTGTCATCTTGGTCACCATCTTTTCCTCTTCATAGTCGTTTTAGAGACCTGTCTTCAAAAACTTGGAGTCAGTTAGCTGGATCAGGTCCTGTGCCATGGAAGCAAGCACCCAGTCTGTTCAATACATCTTCTTCATCTGACCGGCACCCAGATGTGCCCTCTGTAGTTGAAATATCTAGTGTTGACAATATTTATGGAAATGAAAGGATACCTGCCTCATCTCTGGAAAAGAAAAGTGATGATCTTTCTGGTATACCAGCTAATTGGAATGTTAAGAGTGGTTCACGGGAAATGATGTTTATAAATGGAATGCGGAATGATGAAAAGTCTAGTTCATGCTTGAGTATGTGCCAGCAACCTCCTCTAAAAGAGGATTCATCAATGCAACCATTTGGTTTGACTGTACCTTATGCACATCAAAATGAAAGAAATGGTCAAATTGGGGTAACTGGAAGTCATCCGCAACAAACTCCTCCACATGGAAAGCAATTTAGTGGCCCTGTACATGCTGCACTTGATTCATCATGTGAATCACAGGCACGGAATGGACGGCCCAGAGCAGATGCCCGAGGAAGGAACCAGTTACTGCCCCGGTACTGGCCCAGGTGTACTGATCAGGAGCTACATCAAATATCTCTTGACTCTAATTCTGTTATAACTCCATTGTTCCAAAAAACGTTGAGCGCTAGTGATGCTGGGCGAATTGGGCGTCTAGTGCTACCAAAAAAATGTGCTGAGGCCTACTTTCCACCAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAGTTTCGCTTTTGGCCCAACAATAACAGTAGAATGTATGTTTTAGAAGGTGTAACTCCATGCATACAGTCCATGCAATTGCAAGCTGGTGACACAGTAACATTTAGTCGGTTGGAGCCAGAGGGGAGGTTGGTTATGGGATTTCGAAAGGCTTCAAGTGCTACCCAATCTGATCAGGACAACGAAACAAACAAGACTGGAAATGGATATTCTACACATGGTGAAGTTGAATTGGATCCTAGTTCATGGTCTAAAGTTGACAAATCAGGATATATAGCAAAAGAAGCGCTGGGGAGCAAATCTTCCATTTCTAGGAAGAGAAAGAGTAGTGCTTTGGGTTCAAAGAGTAAGCGACTAAGAATTGAGAATGAGGATCTAATAGAGTTGAATATTACATGGGAAGAAGCTCAAGGCCTGCTCCGTCCCCCTCCTAACCATGTTCCCAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAGTATGAGGATGCTCCAGTGCTAGGGAAACCAACAATTTTCACCACGGACAGTGTTGGTGAAAAGATCCAGTGGGCTCAATGTGAAGATTGTCAAAAATGGCGCAAATTGCCAGCCAATGCTCTTCTAACATCAAGATGGACATGTTCAGATAATCCATGGGACCCAGAAAGATCATGTTCGGCTGCACAGGAGTTGACAGCAGAGCAGCTTGAAGATCTGCTTCCCCCTTGCAATTCAGTTGTATCCAAGAAAATGAAGGCCGCCAAGCAGGATCCTGATAATGTTGAAGCTTTGGAAGGACTTGACACTCTTGCTAACCTAGCCATCTTGGGAGAGGGGGAGGCTCTCCCAGCATCTGCCCAAGCCACAACAAAACACCCTCGGCATAGACCGGGCTGCTCTTGCATTGTTTGCATTCAGCCTCCTAGTGGCAAGGGGCCGAAGCATAAGCAGACTTGCACATGTAATGTTTGCTTAACAGTGAAGCGCCGTTTCCGAACCCTGATGTTGCGGCGCGAGAAGAAACAATCAGAGAGAGAAGCAGAGACAACACGCAAAAAGCAACAGGCACAGCCACCCCAGCCACCACAACCAATGTCAGAGATCTTGCTGGATGATGATTCCCTCCCTTGCAGTAACACAGGAGATAGTAGTAGTCCTAACCAGAACAGGGAGGGCAATGAAGGTTCTGATGATGACCCTAACAAGACAAAGTCATCTGCCTCGCCATTCAAAGGCCAGATTGACCTCAATATTCAGCCTGAGCGAGAGGAGGAGTTGTCTCCCAGTTCGGATTCCGGAAGCATGATTAAGTTGCCCCATGATGCTGGTAGGTTTGTGAGGCATCCGAGTATGGTGAACTCTTTTGCCGGAGATACTTCAGGTGGACAGTCACAGCAAGTTGGAGATGAAGCTAGGGAAGAGAAAATTTGCAATGGTGTAGCCCTTGGCAGTAGTAATCATAATGCTGACAAGGAACATGCCCAAACCTTGTCTATGAATGTGTGA 2616 0.4564 MSTVGSSSSSKVCYNSECKELKSDRPKKGWRLRTGEFAELCDRCGSAFEEGRFCEIYHLKASGWRTCETCGKGIHCGCIVSSTAFMLLDPGGIECIACARKNIILSSWSPSFPLHSRFRDLSSKTWSQLAGSGPVPWKQAPSLFNTSSSSDRHPDVPSVVEISSVDNIYGNERIPASSLEKKSDDLSGIPANWNVKSGSREMMFINGMRNDEKSSSCLSMCQQPPLKEDSSMQPFGLTVPYAHQNERNGQIGVTGSHPQQTPPHGKQFSGPVHAALDSSCESQARNGRPRADARGRNQLLPRYWPRCTDQELHQISLDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSATQSDQDNETNKTGNGYSTHGEVELDPSSWSKVDKSGYIAKEALGSKSSISRKRKSSALGSKSKRLRIENEDLIELNITWEEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPTIFTTDSVGEKIQWAQCEDCQKWRKLPANALLTSRWTCSDNPWDPERSCSAAQELTAEQLEDLLPPCNSVVSKKMKAAKQDPDNVEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKQQAQPPQPPQPMSEILLDDDSLPCSNTGDSSSPNQNREGNEGSDDDPNKTKSSASPFKGQIDLNIQPEREEELSPSSDSGSMIKLPHDAGRFVRHPSMVNSFAGDTSGGQSQQVGDEAREEKICNGVALGSSNHNADKEHAQTLSMNV 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0888 871 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 10 813 - -
Prci3g0888 871 SMART B3_2 327 428 IPR003340 GO:0003677
Prci3g0888 871 SUPERFAMILY DNA-binding pseudobarrel domain 324 427 IPR015300 -
Prci3g0888 871 Pfam B3 DNA binding domain 327 426 IPR003340 GO:0003677
Prci3g0888 871 MobiDBLite consensus disorder prediction 707 722 - -
Prci3g0888 871 Pfam CW-type Zinc Finger 559 600 IPR011124 GO:0008270
Prci3g0888 871 MobiDBLite consensus disorder prediction 850 871 - -
Prci3g0888 871 MobiDBLite consensus disorder prediction 426 454 - -
Prci3g0888 871 ProSiteProfiles B3 DNA-binding domain profile. 327 428 IPR003340 GO:0003677
Prci3g0888 871 MobiDBLite consensus disorder prediction 706 806 - -
Prci3g0888 871 Gene3D - 549 605 - -
Prci3g0888 871 MobiDBLite consensus disorder prediction 851 871 - -
Prci3g0888 871 FunFam B3 domain-containing transcription repressor VAL1 305 432 - -
Prci3g0888 871 MobiDBLite consensus disorder prediction 823 842 - -
Prci3g0888 871 MobiDBLite consensus disorder prediction 823 837 - -
Prci3g0888 871 ProSiteProfiles Zinc finger CW-type profile. 554 603 IPR011124 GO:0008270
Prci3g0888 871 Gene3D - 305 432 IPR015300 -
Prci3g0888 871 CDD B3_DNA 325 426 IPR003340 GO:0003677
Prci3g0888 871 MobiDBLite consensus disorder prediction 425 458 - -
Prci3g0888 871 MobiDBLite consensus disorder prediction 746 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0888 Prci-Chr3 11352303 11365035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0888 9 711 B3 DNA Binding Superfamily AT4G32010 46.175 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci3g0888 B3 9.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0888 K09287 - gmx:100807252 1442.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g0888 3 11352303 11365035 Prci3g0888 3 11352303 11365035 ECH