Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0868 ATGGATAATCCTGCTGGTGACTCCAATGAAGGTAATTCAACAAACAACAATAACACTGCTAATAATTTCACCTCAGAGCCATCTTTAGGTAACGACTTGGAAAGCCTTGTGGATATGTTTGCTTCGTTATCAAACACCATCACTCAGCATGATGATCGCCCTGATGGACATGTTAATCGCGCTCTTGATGGGTTAATAGAGGAACTGATGATCATAGGCGGCCATGATCGTGAAGATCTTGTGATTGAAGATGAGGAAGATGTTAGTGTGTTTGCGGACGAGATGATGAGGAACGAGCATGACGAAATGATGAGGAACATCATCGGAAATAGTGAAGCTGTCAGACTGGTTCCAGCAACTGAAGAATCCATTGAGGGATTGGAGAAGGTGACTGTTGAACAAAATGAAGCTGAAGGAAGCACAGAGGGAAATAAGTATGACTGTTCTATTTGTTTTGAAGATTTTTTGAACGACCCAGAAGCTGCTCGTATGCCTTGCTCTCATTTGTTTCACAAAAAATGCATCACTGATTGGCTGCGTACTCGCAATGCTTGTCCTCTCTGTCGCTTTCAAATGCCTACAGATTAA 588 0.4235 MDNPAGDSNEGNSTNNNNTANNFTSEPSLGNDLESLVDMFASLSNTITQHDDRPDGHVNRALDGLIEELMIIGGHDREDLVIEDEEDVSVFADEMMRNEHDEMMRNIIGNSEAVRLVPATEESIEGLEKVTVEQNEAEGSTEGNKYDCSICFEDFLNDPEAARMPCSHLFHKKCITDWLRTRNACPLCRFQMPTD 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0868 195 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 43 193 - -
Prci3g0868 195 Pfam Ring finger domain 147 189 IPR001841 -
Prci3g0868 195 ProSiteProfiles Zinc finger RING-type profile. 148 189 IPR001841 -
Prci3g0868 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 194 IPR013083 -
Prci3g0868 195 SUPERFAMILY RING/U-box 147 193 - -
Prci3g0868 195 SMART ringv_2 147 189 IPR011016 GO:0008270
Prci3g0868 195 MobiDBLite consensus disorder prediction 1 30 - -
Prci3g0868 195 FunFam E3 ubiquitin-protein ligase RNF181 108 195 - -
Prci3g0868 195 CDD RING-H2_PA-TM-RING 147 189 - -
Prci3g0868 195 SMART ring_2 148 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0868 Prci-Chr3 11169559 11170146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0868 101 195 C3H Transcription Factor Family AT3G02340 31.579 2.64e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0868 - - pcin:129305393 384.415