Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0866 ATGGATTCTGAACATTTGTGTGATGTATTCCCAGCAGACACCAACACCCCTATTTCTGCCGATCATTTCATCTCATCTTCTTCAAGCGAACAGTACTTCAAGATCGAGGTCGAATCCAAAAGCTACTATCTCATGGACGGCGTCGTTTTAGACCATTTTACTACTACGAATGAGTGTGGCTTCTCTAATATCCCAAAGCAAGACATAGAACTGTTCATCCATACGATGTTGCCTCATTTTAATGTTCCTGGGAATGCTCAACCTCTCATGGCAGCAAAAATCTTGGCCTGCGCAGAACACATGGCGAATGTGACGCACAAGAACCACAAGATTCTGGGTATGCGTGTTGCTATATCGAATACCACTCAGCTTTATCATTATGAATATCTTCTTCGTAGGGCTGTGAATGAAGTGAATGAACATGAAGATCATCTGAGATCGATGCCGGCAAGCAAGTCAGCCGTTGAGGGATTGGTAGGGCTGAAAGTTGAACAAAAGGAAGAGAGTACTGTGGTGGGAAGAAAACTTTGTAACTGCGCAATTTGCTTTGAAGATTTTTCAATTGATTCAGAAGCTCTTCGCATGCCATGCTTACACTTGTTTCACAAAATCTGCATCATTAATTGGTTAAAGAATCGCAACACTTGCCCTCTCTGTCGTTTTCAAATGCCTGCAGGTGATCATCAATGA 690 0.4246 MDSEHLCDVFPADTNTPISADHFISSSSSEQYFKIEVESKSYYLMDGVVLDHFTTTNECGFSNIPKQDIELFIHTMLPHFNVPGNAQPLMAAKILACAEHMANVTHKNHKILGMRVAISNTTQLYHYEYLLRRAVNEVNEHEDHLRSMPASKSAVEGLVGLKVEQKEESTVVGRKLCNCAICFEDFSIDSEALRMPCLHLFHKICIINWLKNRNTCPLCRFQMPAGDHQ 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0866 229 CDD RING-H2_PA-TM-RING 179 220 - -
Prci3g0866 229 SMART ringv_2 178 220 IPR011016 GO:0008270
Prci3g0866 229 SUPERFAMILY RING/U-box 178 223 - -
Prci3g0866 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 226 IPR013083 -
Prci3g0866 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 60 224 - -
Prci3g0866 229 Pfam Ring finger domain 178 220 IPR001841 -
Prci3g0866 229 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Prci3g0866 229 SMART ring_2 179 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0866 Prci-Chr3 11155350 11156039 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0866 128 227 C3H Transcription Factor Family AT5G01980 41.905 6.93e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0866 - K22378 pcin:129295769 463.766