Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci3g0852 | ATGGCGACTCACCTTCCTGACCACTTCAAGTGTCCGATTTCCCTTGAGATAATGTCCGACCCGGTTATCCTCTCCTCGGGTCACACCTTTGACCGTGCTTCCATCCAACGGTGGCTCGACGCCGGTCACCGGGTTTGTCCAATTACCAAATTACCCCTCCCTGATCACCCTTCCCTCATCCCCAACCATGCTCTTCGAAGCTTGATTTCCAACTATGCTCTCATTTCGCCTCTCAAGCAGCAGCTGCCTCCCCAACCTGAAACCCTAATCTCCTTGCTCACTTCTCGGTCTTCCCCCTTGGAAACTAAAATTGAATTGCTAGACCAACTCACCCGGCTTTCCCGGCGTGACTCGGTGTTTCGCCGGCGCTTGACTGAGTCAGGGGTCGTGTCGGCAATGTTGAACTGCGTTGACTCCGGTGATTCTGGCCTTCAGGAGAAAGCCCTCTCCTTGCTATTGAATCTAAGTCTTGACGATGATAACAAGGTGGGCTTGGTGGCGGAAGGTGTGATAGGTCGAGTTGTGGCTGTTTTGCTGGGTGGTTCACCGAATTGCAGAGCGATGGCGGCAACTATGCTGACCAGCTTGGCGGTTTTGGAAGTAAATAAAGCCACGATTGGTGCATACCCATGTGCTATTGAAACTCTGGTTTCGCTTCTTCGGAATGGTAAAGGGAGAGAGAAGAAGGAAGCTGCCACGGCGCTTTATGCGATCTGCTCTTTTCCTGATAATCGAAGGAGAGCCGTAGAATGCGGGGCGGTGCCTATTTTGCTGGGAACTGTTGGCTCTGGGCTTGAGAGGGCTGTTGAAGTTCTAGGTATTCTGGCTAAGTGTAAGGAAGGCAGGGAACAAATGGAAAGCTATCATGGATGCATACAGATTCTGGCTCGGGTTTTGAGGAATGGAAGCTCGAGGGGAGTTCAATATGCACTGTTGGCACTGAGCTCTCTTTGTTGTTGTAGTGAAAAAATGAGACTGCAGGCTACAAAAGAAGGAGTTTTGGAGATCGGTCTTGCATTGCTGGACGATGATAACGAGAAAGTAAGGAGAAACTCATCGAATTTGGTTCAGGTTCTGCGTGGCAACCACTGGACAAAGTGA | 1101 | 0.5059 | MATHLPDHFKCPISLEIMSDPVILSSGHTFDRASIQRWLDAGHRVCPITKLPLPDHPSLIPNHALRSLISNYALISPLKQQLPPQPETLISLLTSRSSPLETKIELLDQLTRLSRRDSVFRRRLTESGVVSAMLNCVDSGDSGLQEKALSLLLNLSLDDDNKVGLVAEGVIGRVVAVLLGGSPNCRAMAATMLTSLAVLEVNKATIGAYPCAIETLVSLLRNGKGREKKEAATALYAICSFPDNRRRAVECGAVPILLGTVGSGLERAVEVLGILAKCKEGREQMESYHGCIQILARVLRNGSSRGVQYALLALSSLCCCSEKMRLQATKEGVLEIGLALLDDDNEKVRRNSSNLVQVLRGNHWTK | 366 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci3g0852 | 366 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 76 | IPR013083 | - | |
| Prci3g0852 | 366 | FunFam | RING-type E3 ubiquitin transferase | 4 | 76 | - | - | |
| Prci3g0852 | 366 | SUPERFAMILY | RING/U-box | 4 | 73 | - | - | |
| Prci3g0852 | 366 | ProSiteProfiles | U-box domain profile. | 4 | 79 | IPR003613 | GO:0004842|GO:0016567 | |
| Prci3g0852 | 366 | SMART | arm_5 | 117 | 157 | IPR000225 | GO:0005515 | |
| Prci3g0852 | 366 | SMART | arm_5 | 278 | 319 | IPR000225 | GO:0005515 | |
| Prci3g0852 | 366 | SMART | arm_5 | 241 | 277 | IPR000225 | GO:0005515 | |
| Prci3g0852 | 366 | SMART | arm_5 | 202 | 240 | IPR000225 | GO:0005515 | |
| Prci3g0852 | 366 | SMART | arm_5 | 158 | 198 | IPR000225 | GO:0005515 | |
| Prci3g0852 | 366 | CDD | RING-Ubox_PUB | 6 | 55 | IPR045210 | - | |
| Prci3g0852 | 366 | Gene3D | - | 82 | 263 | IPR011989 | - | |
| Prci3g0852 | 366 | SMART | Ubox_2 | 8 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
| Prci3g0852 | 366 | Pfam | U-box domain | 6 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
| Prci3g0852 | 366 | SUPERFAMILY | ARM repeat | 87 | 359 | IPR016024 | - | |
| Prci3g0852 | 366 | Gene3D | - | 264 | 360 | IPR011989 | - | |
| Prci3g0852 | 366 | PANTHER | U BOX DOMAIN-CONTAINING | 6 | 356 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci3g0852 | Prci-Chr3 | 10976185 | 10979959 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci3g0852 | 1 | 361 | U-box Gene Family | AT4G21350 | 61.081 | 1.52e-151 | 430 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci3g0852 | - | - | pcin:129286672 | 560.066 |