Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0799 ATGTTACCTGAACTGGGAATAGTGGAGGATCCTGCCTTTCTTCATCAATGGCAATTGAACTCTCTGGAAGATCCAAGCTTATTTGAAGAGACCTTACAACAACATTCATTCTCTAACCTAAACCCAACAATGTTCAATCCCAAAACGTCCATGGAAACTACACTTTGTAGCATTGAAAGGCCCCAGAAACAGTTCAAACCCAACAATAATTGGAGCCCCAACACAAGTGATCAGAACCAGACGTTAGACACAGACTATGATTCTTGTTCCAATCTTCTTTCCTTTGTCAATTCAAGTTACATAAGCCAATTCGGGACATTGATGAAGCCTAAGGACCAGCAGACACCTTGTCCTGAAATCAACAGTACAATCCCCTCAGACATGTTGGTCTCTTATGGATCCTTGGGAAATCAGAACCTTGTCTTCAATGCAGGACAAGATCCCAGAAAAATTGGAACAAGTCCTAAACTTTCTCAACCTCAAGACCACATAATCGCTGAGCGAAAGCGACGAGAAAAGCTCAGCCAACGGTTCATAGCTCTATCTGCTCTTGTACCTGGCCTCAAAAAGACAGACAAGGCTTCTGTTCTTGGAGATGCTATAAAGTATTTGAAGCAATTGCAAGAGAAGGTTAGGCTCCTTGAAGAGGAACAGAGTAGAAAGAGCACTGTGGAATCTGTGGTGGTTGTGAAGAAAACTCAAATATTAGCCAATGAAAGCCATTGTTCTTCAGACTCTGGTGATCACAGTGAGGAGCCATTACCAGAAATTGAAGCCAGAATTTGTGAAAGAAACGTCCTCATAAGAGTTCACTGTGAGAAAAGAACACAAGTGATAGAAAAAACAGTCAGTGAGATAGAGAAACTCCATCTGATAGTCACAAGTACCAGTGTCATGACATTTGGCAGTTCTGCTCTTGATATAACCATAATCGCTCAGATGGATAAGGACTTTTGCATGACAGTGAAGGAGCTTCTGAGAAGCCTACGCTCAGCTTTTGAATCTTTCATGTGA 1014 0.4181 MLPELGIVEDPAFLHQWQLNSLEDPSLFEETLQQHSFSNLNPTMFNPKTSMETTLCSIERPQKQFKPNNNWSPNTSDQNQTLDTDYDSCSNLLSFVNSSYISQFGTLMKPKDQQTPCPEINSTIPSDMLVSYGSLGNQNLVFNAGQDPRKIGTSPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKTDKASVLGDAIKYLKQLQEKVRLLEEEQSRKSTVESVVVVKKTQILANESHCSSDSGDHSEEPLPEIEARICERNVLIRVHCEKRTQVIEKTVSEIEKLHLIVTSTSVMTFGSSALDITIIAQMDKDFCMTVKELLRSLRSAFESFM 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0799 337 Coils Coil 197 224 - -
Prci3g0799 337 Gene3D - 158 231 IPR036638 GO:0046983
Prci3g0799 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Prci3g0799 337 CDD bHLH_AtNAI1_like 161 232 - -
Prci3g0799 337 MobiDBLite consensus disorder prediction 63 82 - -
Prci3g0799 337 PANTHER BHLH TRANSCRIPTION FACTOR 26 333 - -
Prci3g0799 337 SMART finulus 164 213 IPR011598 GO:0046983
Prci3g0799 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 220 IPR036638 GO:0046983
Prci3g0799 337 Pfam Helix-loop-helix DNA-binding domain 161 208 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0799 Prci-Chr3 10143308 10145219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0799 8 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.348 3.01e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci3g0799 HLH 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0799 - - gmx:100798018 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g0799 3 10143308 10145219 Prci3g0799 3 10143308 10145219 CCT
Prci3g0799 3 10143308 10145219 Prci3g0799 3 10143308 10145219 ECH