Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0773 ATGTGGGTGGCAGGTGAGAGAAAAACCCTAGGTGGTAGATCTATCATGGGAAGAGGGAAGATTGCGATTAGAAGGATCGAGAATTCAACGAGCAGACAAGTGACTTTCTCTAAGAGACGAAATGGATTGCTGAAGAAAGCCAGAGAACTATCAGTTCTTTGCGATGCAGAAGTTGGATTGATTGTCTTCTCCAGCACTGGCAAGCTTTATGACTTTGCAAGCACCAGCATGAAATCTGTTATTGAGCGATACAGCAAGCTTAAAGAGGAACACCTGATGCTTATGAATCCTGCTTCAGAGGTCAAGAGAGAAGTAGCAAGCTTGAGGCAACAACTACAGTACTTGCAAGATTATCACAGGCAACTGATGGGTGAAGAGCTTTCTGGTTTGGGAATTAAAGAACTACAAAATCTGGAAAACCAACTAGAGATGAGTTTGAAGGGTGTCCGAATGAGGAAGGATCAACTTTTAAATGACGAGATTAAAGAACTACACCAAAAGGGAAATCTCATTCATGAAGAAAATGTACAACTTCACAAAAAGATAGACATCATCCAGAAAGAAAATGCAGAACTGAGAAAGAAGGCTTATGAAGCACAAAGCATGAATGAAGAAAATGGGACATCTGATCCGACATGCACTCTAAGCAACGGATATGACTTACACGCACCTATCAGCCTCCAGCTAAGCCAGCCGCAGTCTCAATACAATGAACAACCAACCAAAACAATGAAACTGGGATTACACCAGCATAAGCCCAAGCCAGTTGACAACCAAGGATGGTTGTCTGACAACAAGCTGTCAACAACCAGGCCCTGA 819 0.4261 MWVAGERKTLGGRSIMGRGKIAIRRIENSTSRQVTFSKRRNGLLKKARELSVLCDAEVGLIVFSSTGKLYDFASTSMKSVIERYSKLKEEHLMLMNPASEVKREVASLRQQLQYLQDYHRQLMGEELSGLGIKELQNLENQLEMSLKGVRMRKDQLLNDEIKELHQKGNLIHEENVQLHKKIDIIQKENAELRKKAYEAQSMNEENGTSDPTCTLSNGYDLHAPISLQLSQPQSQYNEQPTKTMKLGLHQHKPKPVDNQGWLSDNKLSTTRP 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0773 272 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Prci3g0773 272 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Prci3g0773 272 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Prci3g0773 272 FunFam MADS-box transcription factor MADS-MC 28 100 - -
Prci3g0773 272 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Prci3g0773 272 MobiDBLite consensus disorder prediction 201 219 - -
Prci3g0773 272 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Prci3g0773 272 Gene3D - 28 105 IPR036879 GO:0003677|GO:0046983
Prci3g0773 272 SUPERFAMILY SRF-like 17 96 IPR036879 GO:0003677|GO:0046983
Prci3g0773 272 Coils Coil 132 152 - -
Prci3g0773 272 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Prci3g0773 272 Pfam K-box region 99 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci3g0773 272 ProSiteProfiles K-box domain profile. 98 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci3g0773 272 MobiDBLite consensus disorder prediction 196 219 - -
Prci3g0773 272 Coils Coil 175 207 - -
Prci3g0773 272 CDD MADS_MEF2_like 17 92 IPR033896 GO:0000977|GO:0045944
Prci3g0773 272 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 209 - -
Prci3g0773 272 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Prci3g0773 272 MobiDBLite consensus disorder prediction 231 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0773 Prci-Chr3 9819004 9834360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0773 16 248 MADS-box Gene Family AT2G14210 59.916 1.27e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci3g0773 K-box 2.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0773 K09264 - tcc:18608170 357.451