Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0772 ATGTGGGTGGCAGGTGAGAGAAAAACCCTAGGTGGTAGATCTATCATGGGAAGAGGGAAGATTGCGATTAGAAGGATCGAGAATTCAACGAGCAGACAAGTGACTTTCTCTAAGAGACGAAATGGATTGCTGAAGAAAGCCAGAGAACTATCAGTTCTTTGCGATGCAGAAGTTGGATTGATTGTCTTCTCCAGCACTGGCAAGCTTTATGACTTTGCAAGCACCAGCATGAAATCTGTTATTGAGCGATACAGCAAGCTTAAAGAGGAACACCTGATGCTTATGAATCCTGCTTCAGAGGTCAAGCTTTGGCAGAGAGAAGTAGCAAGCTTGAGGCAACAACTACAGTACTTGCAAGATTATCACAGGCAACTGATGGGTGAAGAGCTTTCTGGTTTGGGAATTAAAGAACTACAAAATCTGGAAAACCAACTAGAGATGAGTTTGAAGGGTGTCCGAATGAGGAAGGATCAACTTTTAAATGACGAGATTAAAGAACTACACCAAAAGGGAAATCTCATTCATGAAGAAAATGTACAACTTCACAAAAAGATAGACATCATCCAGAAAGAAAATGCAGAACTGAGAAAGAAGGCTTATGAAGCACAAAGCATGAATGAAGAAAATGGGACATCTGATCCGACATGCACTCTAAGCAACGGATATGACTTACACGCACCTATCAGCCTCCAGCTAAGCCAGCCGCAGTCTCAATACAATGAACAACCAACCAAAACAATGAAACTGGGATTACACCAGCATAAGCCCAAGCCAGTTGACAACCAAGGATGGTTGTCTGACAACAAGCTGTCAACAACCAGGCCCTGA 828 0.4275 MWVAGERKTLGGRSIMGRGKIAIRRIENSTSRQVTFSKRRNGLLKKARELSVLCDAEVGLIVFSSTGKLYDFASTSMKSVIERYSKLKEEHLMLMNPASEVKLWQREVASLRQQLQYLQDYHRQLMGEELSGLGIKELQNLENQLEMSLKGVRMRKDQLLNDEIKELHQKGNLIHEENVQLHKKIDIIQKENAELRKKAYEAQSMNEENGTSDPTCTLSNGYDLHAPISLQLSQPQSQYNEQPTKTMKLGLHQHKPKPVDNQGWLSDNKLSTTRP 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0772 275 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 212 - -
Prci3g0772 275 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Prci3g0772 275 MobiDBLite consensus disorder prediction 234 275 - -
Prci3g0772 275 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Prci3g0772 275 Coils Coil 178 210 - -
Prci3g0772 275 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Prci3g0772 275 FunFam MADS-box transcription factor MADS-MC 28 100 - -
Prci3g0772 275 MobiDBLite consensus disorder prediction 204 222 - -
Prci3g0772 275 Gene3D - 28 103 IPR036879 GO:0003677|GO:0046983
Prci3g0772 275 ProSiteProfiles K-box domain profile. 101 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci3g0772 275 Coils Coil 135 155 - -
Prci3g0772 275 SUPERFAMILY SRF-like 17 106 IPR036879 GO:0003677|GO:0046983
Prci3g0772 275 MobiDBLite consensus disorder prediction 199 222 - -
Prci3g0772 275 CDD MADS_MEF2_like 17 92 IPR033896 GO:0000977|GO:0045944
Prci3g0772 275 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Prci3g0772 275 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Prci3g0772 275 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Prci3g0772 275 Pfam K-box region 99 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci3g0772 275 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0772 Prci-Chr3 9819004 9834360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0772 16 251 MADS-box Gene Family AT2G14210 60.759 1.49e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci3g0772 K-box 1.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0772 K09264 - tcc:18608170 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g0772 3 9819004 9834360 Prci3g0772 3 9819004 9834360 CCT