Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0771 ATGGGAAGAGGGAAGATTGCGATTAGAAGGATCGAGAATTCAACGAGCAGACAAGTGACTTTCTCTAAGAGACGAAATGGATTGCTGAAGAAAGCCAGAGAACTATCAGTTCTTTGCGATGCAGAAGTTGGATTGATTGTCTTCTCCAGCACTGGCAAGCTTTATGACTTTGCAAGCACCAGCATGAAATCTGTTATTGAGCGATACAGCAAGCTTAAAGAGGAACACCTGATGCTTATGAATCCTGCTTCAGAGGTCAAGCTTTGGCAGAGAGAAGTAGCAAGCTTGAGGCAACAACTACAGTACTTGCAAGATTATCACAGGCAACTGATGGGTGAAGAGCTTTCTGGTTTGGGAATTAAAGAACTACAAAATCTGGAAAACCAACTAGAGATGAGTTTGAAGGGTGTCCGAATGAGGAAGGATCAACTTTTAAATGACGAGATTAAAGAACTACACCAAAAGGGAAATCTCATTCATGAAGAAAATGTACAACTTCACAAAAAGATAGACATCATCCAGAAAGAAAATGCAGAACTGAGAAAGAAGGCTTATGAAGCACAAAGCATGAATGAAGAAAATGGGACATCTGATCCGACATGCACTCTAAGCAACGGATATGACTTACACGCACCTATCAGCCTCCAGCTAAGCCAGCCGCAGTCTCAATACAATGAACAACCAACCAAAACAATGAAACTGGGATTACACCAGCATAAGCCCAAGCCAGTTGACAACCAAGGATGGTTGTCTGACAACAAGCTGTCAACAACCAGGCCCTGA 783 0.424 MGRGKIAIRRIENSTSRQVTFSKRRNGLLKKARELSVLCDAEVGLIVFSSTGKLYDFASTSMKSVIERYSKLKEEHLMLMNPASEVKLWQREVASLRQQLQYLQDYHRQLMGEELSGLGIKELQNLENQLEMSLKGVRMRKDQLLNDEIKELHQKGNLIHEENVQLHKKIDIIQKENAELRKKAYEAQSMNEENGTSDPTCTLSNGYDLHAPISLQLSQPQSQYNEQPTKTMKLGLHQHKPKPVDNQGWLSDNKLSTTRP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0771 260 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Prci3g0771 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci3g0771 260 MobiDBLite consensus disorder prediction 189 207 - -
Prci3g0771 260 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Prci3g0771 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci3g0771 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci3g0771 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci3g0771 260 Coils Coil 120 140 - -
Prci3g0771 260 MobiDBLite consensus disorder prediction 184 207 - -
Prci3g0771 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci3g0771 260 Coils Coil 163 195 - -
Prci3g0771 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci3g0771 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 194 - -
Prci3g0771 260 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci3g0771 260 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Prci3g0771 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci3g0771 260 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci3g0771 260 MobiDBLite consensus disorder prediction 219 260 - -
Prci3g0771 260 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0771 Prci-Chr3 9818986 9834360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0771 1 236 MADS-box Gene Family AT2G14210 60.759 5.82e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci3g0771 K-box 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0771 K09264 - tcc:18608170 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g0771 3 9818986 9834360 Prci3g0771 3 9818986 9834360 CCT
Prci3g0771 3 9818986 9834360 Prci3g0771 3 9818986 9834360 ECH