Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0770 ATGTGGGTGGCAGGTGAGAGAAAAACCCTAGGTGGTAGATCTATCATGGGAAGAGGGAAGATTGCGATTAGAAGGATCGAGAATTCAACGAGCAGACAAGTGACTTTCTCTAAGAGACGAAATGGATTGCTGAAGAAAGCCAGAGAACTATCAGTTCTTTGCGATGCAGAAGTTGGATTGATTGTCTTCTCCAGCACTGGCAAGCTTTATGACTTTGCAAGCACCAGCATGAAATCTGTTATTGAGCGATACAGCAAGCTTAAAGAGGAACACCTGATGCTTATGAATCCTGCTTCAGAGGTCAAGCTTTGGCAGAGAGAAGTAGCAAGCTTGAGGCAACAACTACAGTACTTGCAAGATTATCACAGGCAACTGATGGGTGAAGAGCTTTCTGGTTTGGGAATTAAAGAACTACAAAATCTGGAAAACCAACTAGAGATGAGTTTGAAGGGTGTCCGAATGAGGAAGGTATGA 474 0.4346 MWVAGERKTLGGRSIMGRGKIAIRRIENSTSRQVTFSKRRNGLLKKARELSVLCDAEVGLIVFSSTGKLYDFASTSMKSVIERYSKLKEEHLMLMNPASEVKLWQREVASLRQQLQYLQDYHRQLMGEELSGLGIKELQNLENQLEMSLKGVRMRKV 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0770 157 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Prci3g0770 157 FunFam MADS-box transcription factor MADS-MC 28 100 - -
Prci3g0770 157 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 155 - -
Prci3g0770 157 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Prci3g0770 157 Gene3D - 28 107 IPR036879 GO:0003677|GO:0046983
Prci3g0770 157 ProSiteProfiles K-box domain profile. 101 157 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci3g0770 157 Coils Coil 135 155 - -
Prci3g0770 157 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Prci3g0770 157 Pfam K-box region 99 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci3g0770 157 SUPERFAMILY SRF-like 17 106 IPR036879 GO:0003677|GO:0046983
Prci3g0770 157 CDD MADS_MEF2_like 17 92 IPR033896 GO:0000977|GO:0045944
Prci3g0770 157 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Prci3g0770 157 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Prci3g0770 157 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Prci3g0770 157 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0770 Prci-Chr3 9818985 9833217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0770 16 156 MADS-box Gene Family AT4G37940 72.340 5.50e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci3g0770 K-box 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0770 K09264 - tcc:18608170 250.751