Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0768 ATGGCTTCTTTCTGGTCCCTCGAACTCCTCCTTAAATGCATTGATTTTCTTTCATGGCCCGTTCTTGCTTTGGTTTATCCTCTATGCGCTTCCGTTGAAGCAATTGAGAATGATAGCCATTCAGACACTCGGAATTTGATCTCTTATTGGATACTTCTCTCACTGATATACCTCTTTGAGTATGCTTTTCTCCAGCTTCTTCAATGGATTCCGTACTGGCATTACGTGAAGCTAGCGATTGTTGTCTACCTTGTGATGCCGGACTTTGGAAGAGCTGCTTATGTCTATAATCACCTCATTCGTTCATGTCTCTACATGAATCCACAGGCAGTCATAAGCAGATTCAGCGACTGGAAGAAGATATTTGTCGAGAAAGAAGACTTTCTAATGCAGGCTGAGAAGTACATAACACAGAATGGAACTGAAGGCTTAGAGAAACTCATTGTTAGCAAGAGCACAGAGAAAAGTCCTAATGCAGAAACAAGAAAAGCAGTGCCAAGTACTGAGAAGAATGAAATCCTGAAGACAAATAGAGGAAGGCTTCACATGGAACAGAAAGATATCAAAGATTTGGAGATGATTGAAAAAGAGGAAGTTTCCGAAGTCAAGCAAGCTAATACAGCCTTGTGCAGCCTCGAATCAAATGAAAGCACATCATCTTCCACAGTGAAAACCCAAAAAATGGCGGCAGACAAAGAGGGAGGAGCATATCCTCAGATTTCTGCACTTGAGAATGTACAAAAAGAGTGGACTTGTGCCATATGTCAGTTGACAATGCCTTCTGAAGCTAATTTGAATTCCCACCTACAAGGAAGGAAGCATAAGATGGCTTGTGAAGCACTGAAAGCAAAGAAAACAGAAGGAAATGCCGCGGCGACTGGCACAGGAAACGGAGCATCTCATCAGAGTTGTTTGTCTAATGTACAGAAAGAGTGGACTTGTAACATATGCCAGGTTAGAACTACTTCCGAAGCTAATTTGAATGCCCACCTGCAAGGAAAGCAGCATAAGGCTGCTTTTGAAGCACAGAAAGCGAAAAGCCTGAATGTTGCTGAGAAAGTTTTGCTGAAGAAGAATGACAAGTCCAATGGAGAACAAGAGAAGATAATGAATACTTCAAATGCATCAGAACAGAATATTACGACCAGTCATCATCCAAAAATGGAGCATAAAAATGTTCAAACTGTAAACATCATTCAGGGGAATAAAAGCAAAGGTTTTGATCCCAAAACCAAGGTGCAAGAATTGCAGAAGAGCACTGGAACATCAATTGAAATAAACAGTTCCAGATTAAGATGTGATATGTGTAATGTAAAGTGCACTAGTGAAGTTGACTTGGCTTCTCACTTCCGGGGCAGGAAACACTTGGCTCAGAGTCAAATTCTTAGTGGTCCTAGTTAG 1401 0.4126 MASFWSLELLLKCIDFLSWPVLALVYPLCASVEAIENDSHSDTRNLISYWILLSLIYLFEYAFLQLLQWIPYWHYVKLAIVVYLVMPDFGRAAYVYNHLIRSCLYMNPQAVISRFSDWKKIFVEKEDFLMQAEKYITQNGTEGLEKLIVSKSTEKSPNAETRKAVPSTEKNEILKTNRGRLHMEQKDIKDLEMIEKEEVSEVKQANTALCSLESNESTSSSTVKTQKMAADKEGGAYPQISALENVQKEWTCAICQLTMPSEANLNSHLQGRKHKMACEALKAKKTEGNAAATGTGNGASHQSCLSNVQKEWTCNICQVRTTSEANLNAHLQGKQHKAAFEAQKAKSLNVAEKVLLKKNDKSNGEQEKIMNTSNASEQNITTSHHPKMEHKNVQTVNIIQGNKSKGFDPKTKVQELQKSTGTSIEINSSRLRCDMCNVKCTSEVDLASHFRGRKHLAQSQILSGPS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0768 466 SUPERFAMILY beta-beta-alpha zinc fingers 423 461 IPR036236 -
Prci3g0768 466 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Prci3g0768 466 ProSitePatterns Zinc finger C2H2 type domain signature. 433 455 IPR013087 -
Prci3g0768 466 PANTHER OS06G0651300 PROTEIN-RELATED 297 460 - -
Prci3g0768 466 SMART ZnF_U1_5 247 281 IPR003604 GO:0003676|GO:0008270
Prci3g0768 466 SMART ZnF_U1_5 428 462 IPR003604 GO:0003676|GO:0008270
Prci3g0768 466 SMART ZnF_U1_5 309 343 IPR003604 GO:0003676|GO:0008270
Prci3g0768 466 Pfam Zinc-finger of C2H2 type 250 274 - -
Prci3g0768 466 Pfam Zinc-finger of C2H2 type 432 455 - -
Prci3g0768 466 Pfam Zinc-finger of C2H2 type 312 336 - -
Prci3g0768 466 Gene3D Classic Zinc Finger 222 279 - -
Prci3g0768 466 Gene3D Classic Zinc Finger 297 344 - -
Prci3g0768 466 Gene3D Classic Zinc Finger 409 460 - -
Prci3g0768 466 ProSitePatterns Zinc finger C2H2 type domain signature. 252 274 IPR013087 -
Prci3g0768 466 SMART c2h2final6 250 274 IPR013087 -
Prci3g0768 466 SMART c2h2final6 312 336 IPR013087 -
Prci3g0768 466 SMART c2h2final6 431 455 IPR013087 -
Prci3g0768 466 SUPERFAMILY beta-beta-alpha zinc fingers 240 287 IPR036236 -
Prci3g0768 466 SUPERFAMILY beta-beta-alpha zinc fingers 290 346 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0768 Prci-Chr3 9762571 9766978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0768 252 457 C2H2 Transcription Factor Family AT5G61190 24.434 5.90e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci3g0768 TB2_DP1_HVA22 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0768 - - pcin:129306216 888.256