Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0767 ATGGCTTCTTTCTGGTCCCTCGAACTCCTCCTTAAATGCATTGATTTTCTTTCATGGCCCGTTCTTGCTTTGGTTTATCCTCTATGCGCTTCCGTTGAAGCAATTGAGAATGATAGCCATTCAGACACTCGGAATTTGATCTCTTATTGGATACTTCTCTCACTGATATACCTCTTTGAGTATGCTTTTCTCCAGCTTCTTCAATGGATTCCGTACTGGCATTACGTGAAGCTAGCGATTGTTGTCTACCTTGTGATGCCGGACTTTGGAAGAGCTGCTTATGTCTATAATCACCTCATTCGTTCATGTCTCTACATGAATCCACAGGCAGTCATAAGCAGATTCAGCGACTGGAAGAAGATATTTGTCGAGAAAGAAGACTTTCTAATGCAGGCTGAGAAGTACATAACACAGAATGGAACTGAAGGCTTAGAGAAACTCATTGTTAGCAAGAGCACAGAGAAAAGTCCTAATGCAGAAACAAGAAAAGCAGTGCCAAGTACTGAGAAGAATGAAATCCTGAAGACAAATAGAGGAAGGCTTCACATGGAACAGAAAGATATCAAAGATTTGGAGATGATTGAAAAAGAGGAAGTTTCCGAAGTCAAGCAATTTTCAACATTTCAGGCTAATACAGCCTTGTGCAGCCTCGAATCAAATGAAAGCACATCATCTTCCACAGTGAAAACCCAAAAAATGGCGGCAGACAAAGAGGGAGGAGCATATCCTCAGATTTCTGCACTTGAGAATGTACAAAAAGAGTGGACTTGTGCCATATGTCAGTTGACAATGCCTTCTGAAGCTAATTTGAATTCCCACCTACAAGGAAGGAAGCATAAGATGGCTTGTGAAGCACTGAAAGCAAAGAAAACAGAAGGAAATGCCGCGGCGACTGGCACAGGAAACGGAGCATCTCATCAGAGTTGTTTGTCTAATGTACAGAAAGAGTGGACTTGTAACATATGCCAGGTTAGAACTACTTCCGAAGCTAATTTGAATGCCCACCTGCAAGGAAAGCAGCATAAGGCTGCTTTTGAAGCACAGAAAGCGAAAAGCCTGAATGTTGCTGAGAAAGTTTTGCTGAAGAAGAATGACAAGTCCAATGGAGAACAAGAGAAGATAATGAATACTTCAAATGCATCAGAACAGAATATTACGACCAGTCATCATCCAAAAATGGAGCATAAAAATGTTCAAACTGTAAACATCATTCAGGGGAATAAAAGCAAAGGTTTTGATCCCAAAACCAAGGTGCAAGAATTGCAGAAGAGCACTGGAACATCAATTGAAATAAACAGTTCCAGATTAAGATGTGATATGTGTAATGTAAAGTGCACTAGTGAAGTTGACTTGGCTTCTCACTTCCGGGGCAGGAAACACTTGGCTCAGAGTCAAATTCTTAGTGGTCCTAGTTAG 1416 0.411 MASFWSLELLLKCIDFLSWPVLALVYPLCASVEAIENDSHSDTRNLISYWILLSLIYLFEYAFLQLLQWIPYWHYVKLAIVVYLVMPDFGRAAYVYNHLIRSCLYMNPQAVISRFSDWKKIFVEKEDFLMQAEKYITQNGTEGLEKLIVSKSTEKSPNAETRKAVPSTEKNEILKTNRGRLHMEQKDIKDLEMIEKEEVSEVKQFSTFQANTALCSLESNESTSSSTVKTQKMAADKEGGAYPQISALENVQKEWTCAICQLTMPSEANLNSHLQGRKHKMACEALKAKKTEGNAAATGTGNGASHQSCLSNVQKEWTCNICQVRTTSEANLNAHLQGKQHKAAFEAQKAKSLNVAEKVLLKKNDKSNGEQEKIMNTSNASEQNITTSHHPKMEHKNVQTVNIIQGNKSKGFDPKTKVQELQKSTGTSIEINSSRLRCDMCNVKCTSEVDLASHFRGRKHLAQSQILSGPS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0767 471 SUPERFAMILY beta-beta-alpha zinc fingers 245 292 IPR036236 -
Prci3g0767 471 SMART c2h2final6 317 341 IPR013087 -
Prci3g0767 471 SMART c2h2final6 255 279 IPR013087 -
Prci3g0767 471 SMART c2h2final6 436 460 IPR013087 -
Prci3g0767 471 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Prci3g0767 471 Pfam Zinc-finger of C2H2 type 317 341 - -
Prci3g0767 471 Pfam Zinc-finger of C2H2 type 255 279 - -
Prci3g0767 471 Pfam Zinc-finger of C2H2 type 437 460 - -
Prci3g0767 471 ProSitePatterns Zinc finger C2H2 type domain signature. 257 279 IPR013087 -
Prci3g0767 471 PANTHER OS06G0651300 PROTEIN-RELATED 310 465 - -
Prci3g0767 471 SMART ZnF_U1_5 252 286 IPR003604 GO:0003676|GO:0008270
Prci3g0767 471 SMART ZnF_U1_5 314 348 IPR003604 GO:0003676|GO:0008270
Prci3g0767 471 SMART ZnF_U1_5 433 467 IPR003604 GO:0003676|GO:0008270
Prci3g0767 471 Gene3D Classic Zinc Finger 227 284 - -
Prci3g0767 471 Gene3D Classic Zinc Finger 414 465 - -
Prci3g0767 471 Gene3D Classic Zinc Finger 302 349 - -
Prci3g0767 471 ProSitePatterns Zinc finger C2H2 type domain signature. 438 460 IPR013087 -
Prci3g0767 471 SUPERFAMILY beta-beta-alpha zinc fingers 295 351 IPR036236 -
Prci3g0767 471 SUPERFAMILY beta-beta-alpha zinc fingers 428 466 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0767 Prci-Chr3 9762571 9766978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0767 257 462 C2H2 Transcription Factor Family AT5G61190 24.434 6.35e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci3g0767 TB2_DP1_HVA22 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0767 - - pcin:129306216 904.434