Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0683 ATGGCCACCTTCGCCACCACTCCTCCACCGTTAGGTCCGACGTCTCAAGCCCTAAAATTGGAGGCTCTTGCTCGCATAGACATCACCACCCTCTCACAGTCCGAGCTCCAAGTGCTCTCTCTCTGCTCACCCTCGGCCTTCGACCTCCGCTCTACCACGGACCTCGTTTTCCCCAAAGTCGACCGTTCACTCTTCAATGAGAGTGCTGGCACACGCCGCCAGACCTACTCTCGGCCCCGCAAACCCCTTTCCCCTTCTGACTCCCCCACCGGCCACCGCCGCCGCGTCGCCGGTCTTCTTCCCACTCCAAAGCTCCCACCTCTCCCCGATGACGACCCGGAAAACTTAGAAAACCGCAAAATTATAGATTACTTGAAGCAATTGATCAGGGAAGACCCTAAATTCGATCAAGTGGAGCTTGCCCCACCTGCTGCCGCCCCCGAATTTGTACCCAATTGTGAATTAAGGGTCGGGATGGTTGAGAGCGAGGATGTGGGGCTGATGAAATTAGGTGGGGAACGTAAAAGGAAGAGGGGGAGGAAGCCGAAAGTGAAGGTGCATTTGAAGGAGTGCTATAGAGAGATGGAGATAGTGAACAAGGGTGGCGTCGCGATTGATCTTTCTGCTTTGGCGAGTACACAGGATCCCTTTTCTGAGGAGTTGAGGAGAAGGACTGAGGGGTTGCAGAGTGAAGAAGAGCTATTGGGTTTTTTGAGGGATTTGGGGGGACAATGGGGAAGTAGGAGGAAGAAGAGGAAGATTGTGGATGCCGGAGATTTTGGGGATGTACTGCCTCTTGGTTGGAAGCTTCTATTGGGTTTGAAGAGAAAAGATGGTCGCGCGTGGATTTATTGCCGCAGATACATCAGTCCTAGTGGAGAACAATTTGTGTCTTGCAAAGAAGTTTCTTCATATCTTCAAACCCTTTTTGGTCACAATGATGCCCAGTTACCAATCAATCGTAGGGGTGAAAATATGCTGATGGACAACAGGGTGGCTACTCAGAGTGGTGCAGGTAATACCCACGAGGATCAGGATAAAAGGATGGTCATTGCAAATGACTCAATTCCACCCATTTCTTCTGAATGTAATGAACGTTTGAAGGAAGTAGCCTTATTGGGAATCGATAATCTTGAAGAAGTGCAAATACATGATCTGTTTGAATGTCACAAATGTAACATGACCTTTGATGAGAAGGATTCATACTTGCAGCACCTTTTGTCTTTCCACCAAAGGACAACGAGGCGCTATCGACTTGGTTCTTCTGTTGGAGATGGAGTTATAATCAAAGATGGAAAATTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTTGAAAGGCGTCGCTACAATGGACATGTGGGGATCCATGTTAGGAACTATGTGAGGAAAGTTGAAGAATCACCAGGTCAGGTAAATGTTCAAAGGAGAGATAAGTCTCCAGTCAAGGAGGATTTGCCCTCAAGGATCTCTAAGATGGATGCTTTAATTGAAATTGCTCAGAACTCTATTATGGAGAATTCTGCTATTGAACCGCATGGTAATCATGCTTCCTCTCCTGATAAACTGAATGTAATTTCTACTACAGAAATTACTGTTGGTAACCTTGACCATGAAAAATTTTTTGAGTCTCCTGTCAGTGAACAGCAAATGGAAGACAGCTTCACTGGCAAAAATGTGGATCACAATTTATATCACCAAGATGGTAAACTTGCAGCCATGGATGAAGAAGTGGAGAACAATGATGGTGGTAACGAATTTATAGATTCTAAGACAGATACCTGTGTAGATCTCATGGGTTTATCGACTGTAAATGAGCAAAATGTTGATGAATTTGAGAGTTCAAAGATAAAAGATGATGTGGTATTGACTTTTGATGGTTTAGGTCAGTCTAGTGTTGATTTGGAAGGAGTTTCACAAAGCCCTTTACTTCCTTTTTCTGGCAGTTGTGTAATTCCTGAAGTTGAAAATAATAGAAATTCCAGTGGCACTAATACTGTGGAGCAACTTAACCATGAAGACAGCAGAAGTAAGAGCGAGCTCAAAATTGGATTAGATGACACAATAGATGCATCTATTATGTCTAAAATCCAAGAGACGGCATTGCCAACTTCTGATGAGAATACAGTTTCATCTGAGGTTCCAAACCCATCTATGTCCATGGTACAATCTTTGGATTGCTTTTCCCATCTCACTGGACTCTCAGATAAGGAAGACGACTTTTTAGGTGGTTGCCGGGGGCTGGGGTGTGGGGAAGTAAGGATGCTTCCATAA 2271 0.4522 MATFATTPPPLGPTSQALKLEALARIDITTLSQSELQVLSLCSPSAFDLRSTTDLVFPKVDRSLFNESAGTRRQTYSRPRKPLSPSDSPTGHRRRVAGLLPTPKLPPLPDDDPENLENRKIIDYLKQLIREDPKFDQVELAPPAAAPEFVPNCELRVGMVESEDVGLMKLGGERKRKRGRKPKVKVHLKECYREMEIVNKGGVAIDLSALASTQDPFSEELRRRTEGLQSEEELLGFLRDLGGQWGSRRKKRKIVDAGDFGDVLPLGWKLLLGLKRKDGRAWIYCRRYISPSGEQFVSCKEVSSYLQTLFGHNDAQLPINRRGENMLMDNRVATQSGAGNTHEDQDKRMVIANDSIPPISSECNERLKEVALLGIDNLEEVQIHDLFECHKCNMTFDEKDSYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKVEESPGQVNVQRRDKSPVKEDLPSRISKMDALIEIAQNSIMENSAIEPHGNHASSPDKLNVISTTEITVGNLDHEKFFESPVSEQQMEDSFTGKNVDHNLYHQDGKLAAMDEEVENNDGGNEFIDSKTDTCVDLMGLSTVNEQNVDEFESSKIKDDVVLTFDGLGQSSVDLEGVSQSPLLPFSGSCVIPEVENNRNSSGTNTVEQLNHEDSRSKSELKIGLDDTIDASIMSKIQETALPTSDENTVSSEVPNPSMSMVQSLDCFSHLTGLSDKEDDFLGGCRGLGCGEVRMLP 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0683 756 Gene3D Classic Zinc Finger 363 462 - -
Prci3g0683 756 SMART c2h2final6 387 410 IPR013087 -
Prci3g0683 756 SMART c2h2final6 434 456 IPR013087 -
Prci3g0683 756 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 254 326 IPR001739 GO:0003677
Prci3g0683 756 MobiDBLite consensus disorder prediction 655 681 - -
Prci3g0683 756 ProSitePatterns Zinc finger C2H2 type domain signature. 436 456 IPR013087 -
Prci3g0683 756 ProSitePatterns Zinc finger C2H2 type domain signature. 389 410 IPR013087 -
Prci3g0683 756 MobiDBLite consensus disorder prediction 655 669 - -
Prci3g0683 756 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 1 676 IPR037472 -
Prci3g0683 756 ProSiteProfiles Zinc finger C2H2 type domain profile. 434 461 IPR013087 -
Prci3g0683 756 SUPERFAMILY DNA-binding domain 262 309 IPR016177 GO:0003677
Prci3g0683 756 MobiDBLite consensus disorder prediction 68 84 - -
Prci3g0683 756 ProSiteProfiles Zinc finger C2H2 type domain profile. 387 415 IPR013087 -
Prci3g0683 756 MobiDBLite consensus disorder prediction 68 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0683 Prci-Chr3 8625274 8630239 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci3g0683 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0683 - - qsa:O6P43_012364 776.933