Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0681 ATGGCCACCTTCGCCACCACTCCTCCACCGTTAGGTCCGACGTCTCAAGCCCTAAAATTGGAGGCTCTTGCTCGCATAGACATCACCACCCTCTCACAGTCCGAGCTCCAAGTGCTCTCTCTCTGCTCACCCTCGGCCTTCGACCTCCGCTCTACCACGGACCTCGTTTTCCCCAAAGTCGACCGTTCACTCTTCAATGAGAGTGCTGGCACACGCCGCCAGACCTACTCTCGGCCCCGCAAACCCCTTTCCCCTTCTGACTCCCCCACCGGCCACCGCCGCCGCGTCGCCGGTCTTCTTCCCACTCCAAAGCTCCCACCTCTCCCCGATGACGACCCGGAAAACTTAGAAAACCGCAAAATTATAGATTACTTGAAGCAATTGATCAGGGAAGACCCTAAATTCGATCAAGTGGAGCTTGCCCCACCTGCTGCCGCCCCCGAATTTGTACCCAATTGTGAATTAAGGGTCGGGATGGTTGAGAGCGAGGATGTGGGGCTGATGAAATTAGGTGGGGAACGTAAAAGGAAGAGGGGGAGGAAGCCGAAAGTGAAGGTGCATTTGAAGGAGTGCTATAGAGAGATGGAGATAGTGAACAAGGGTGGCGTCGCGATTGATCTTTCTGCTTTGGCGAGTACACAGGATCCCTTTTCTGAGGAGTTGAGGAGAAGGACTGAGGGGTTGCAGAGTGAAGAAGAGCTATTGGGTTTTTTGAGGGATTTGGGGGGACAATGGGGAAGTAGGAGGAAGAAGAGGAAGATTGTGGATGCCGGAGATTTTGGGGATGTACTGCCTCTTGGTTGGAAGCTTCTATTGGGTTTGAAGAGAAAAGATGGTCGCGCGTGGATTTATTGCCGCAGATACATCAGTCCTAGTGGAGAACAATTTGTGTCTTGCAAAGAAGTTTCTTCATATCTTCAAACCCTTTTTGGTCACAATGATGCCCAGTTACCAATCAATCGTAGGGGTGAAAATATGCTGATGGACAACAGGGTGGCTACTCAGAGTGGTGCAGGTAATACCCACGAGGATCAGGATAAAAGGATGGTCATTGCAAATGACTCAATTCCACCCATTTCTTCTGAATGTAATGAACGTTTGAAGGAAGTAGCCTTATTGGGAATCGATAATCTTGAAGAAGTGCAAATACATGATCTGTTTGAATGTCACAAATGTAACATGACCTTTGATGAGAAGGATTCATACTTGCAGCACCTTTTGTCTTTCCACCAAAGGACAACGAGGCGCTATCGACTTGGTTCTTCTGTTGGAGATGGAGTTATAATCAAAGATGGAAAATTTGAGTGCCAGTTCTGCCATAAGGTGTTTCTTGAAAGGCGTCGCTACAATGGACATGTGGGGATCCATGTTAGGAACTATGTGAGGAAAGTTGAAGAATCACCAGGTCAGGTAAATGTTCAAAGGAGAGATAAGTCTCCAGTCAAGGAGGATTTGCCCTCAAGGATCTCTAAGATGGATGCTTTAATTGAAATTGCTCAGAACTCTATTATGGAGAATTCTGCTATTGAACCGCATGGTAATCATGCTTCCTCTCCTGATAAACTGAATGTAATTTCTACTACAGAAATTACTGTTGGTAACCTTGACCATGAAAAATTTTTTGAGTCTCCTGTCAGTGAACAGCAAATGGAAGACAGCTTCACTGGCAAAAATGTGGATCACAATTTATATCACCAAGATGGTAAACTTGCAGCCATGGATGAAGAAGTGGAGAACAATGATGGTGGTAACGAATTTATAGATTCTAAGACAGATACCTGTGTAGATCTCATGGGTTTATCGACTGTAAATGAGCAAAATGTTGATGAATTTGAGAGTTCAAAGATAAAAGATGATGTGGTATTGACTTTTGATGGTTTAGGTCAGTCTAGTGTTGATTTGGAAGGAGTTTCACAAAGCCCTTTACTTCCTTTTTCTGGCAGTTGTGTAATTCCTGAAGTTGAAAATAATAGAAATTCCAGTGGCACTAATACTGTGGAGCAACTTAACCATGAAGACAGCAGAAGTAAGAGCGAGCTCAAAATTGGATTAGATGACACAATAGATGCATCTATTATGTCTAAAATCCAAGAGACGGCATTGCCAACTTCTGATGAGAATACAGTTTCATCTGAGGTTCCAAACCCATCTATGTCCATGGTACAATCTTTGGATTGCTTTTCCCATCTCACTGGACTCTCAGATAAGGTGCCAACAGGTTTGGCAAACAATACAAAGATGGAAGAAGGGGCACATGCTTCCTCCGTTCAGCTTGAATCTTTAGAAGCAGGCAGACATCAGATTACAACTGTGTGTGTATGGTGTGGTGTAGAGTTTAATTATGATGCTGTTGATTCTGAAATACAACCGGATTCCGTAGGATTCATGTGCCCAGCTTGCAAGTCCAAAATATCTGGTGTTGGACAGTGA 2430 0.4486 MATFATTPPPLGPTSQALKLEALARIDITTLSQSELQVLSLCSPSAFDLRSTTDLVFPKVDRSLFNESAGTRRQTYSRPRKPLSPSDSPTGHRRRVAGLLPTPKLPPLPDDDPENLENRKIIDYLKQLIREDPKFDQVELAPPAAAPEFVPNCELRVGMVESEDVGLMKLGGERKRKRGRKPKVKVHLKECYREMEIVNKGGVAIDLSALASTQDPFSEELRRRTEGLQSEEELLGFLRDLGGQWGSRRKKRKIVDAGDFGDVLPLGWKLLLGLKRKDGRAWIYCRRYISPSGEQFVSCKEVSSYLQTLFGHNDAQLPINRRGENMLMDNRVATQSGAGNTHEDQDKRMVIANDSIPPISSECNERLKEVALLGIDNLEEVQIHDLFECHKCNMTFDEKDSYLQHLLSFHQRTTRRYRLGSSVGDGVIIKDGKFECQFCHKVFLERRRYNGHVGIHVRNYVRKVEESPGQVNVQRRDKSPVKEDLPSRISKMDALIEIAQNSIMENSAIEPHGNHASSPDKLNVISTTEITVGNLDHEKFFESPVSEQQMEDSFTGKNVDHNLYHQDGKLAAMDEEVENNDGGNEFIDSKTDTCVDLMGLSTVNEQNVDEFESSKIKDDVVLTFDGLGQSSVDLEGVSQSPLLPFSGSCVIPEVENNRNSSGTNTVEQLNHEDSRSKSELKIGLDDTIDASIMSKIQETALPTSDENTVSSEVPNPSMSMVQSLDCFSHLTGLSDKVPTGLANNTKMEEGAHASSVQLESLEAGRHQITTVCVWCGVEFNYDAVDSEIQPDSVGFMCPACKSKISGVGQ 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0681 809 MobiDBLite consensus disorder prediction 654 669 - -
Prci3g0681 809 SMART c2h2final6 387 410 IPR013087 -
Prci3g0681 809 SMART c2h2final6 434 456 IPR013087 -
Prci3g0681 809 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 254 326 IPR001739 GO:0003677
Prci3g0681 809 ProSitePatterns Zinc finger C2H2 type domain signature. 436 456 IPR013087 -
Prci3g0681 809 ProSitePatterns Zinc finger C2H2 type domain signature. 389 410 IPR013087 -
Prci3g0681 809 ProSiteProfiles Zinc finger C2H2 type domain profile. 434 461 IPR013087 -
Prci3g0681 809 MobiDBLite consensus disorder prediction 654 680 - -
Prci3g0681 809 Gene3D Classic Zinc Finger 363 462 - -
Prci3g0681 809 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 659 806 IPR037472 -
Prci3g0681 809 MobiDBLite consensus disorder prediction 68 84 - -
Prci3g0681 809 SUPERFAMILY DNA-binding domain 262 309 IPR016177 GO:0003677
Prci3g0681 809 ProSiteProfiles Zinc finger C2H2 type domain profile. 387 415 IPR013087 -
Prci3g0681 809 MobiDBLite consensus disorder prediction 68 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0681 Prci-Chr3 8625101 8630239 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci3g0681 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0681 - - qsa:O6P43_012364 854.744