Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0664 ATGCTTCGTGAAAGTTCTGCATTGGCCCCCACAAACCCTAGCCTAATCTTATATTCCCTTCTTTCACCCTCACGGTCCTCTGCGCTCGAAGCTTCAACAATGTCTCACTTTGGAAGGTCGGGTCCTCCAGACATCACTGACACCTATTCGCTTCTAGTGCTCAATATCACATTCCGTACAACCGCAGATGATCTGTTTCCCCTGTTCGATAAGTACGGCAAGGTCGTCGACATCTTTATTCCCAGAGATCGAAGGACCGGTGAATCAAGGGGTTTTGCATTCGTGCGTTATAAGTATGCTGATGAGGCACAAAAGGCTGTGGATAGGCTGGACGGAAGAGTGGTTGATGGCCGGGAGATAACTGTTCAATTTGCAAAATATGGGCCTAATGCAGAGAGGATTCACAAAGGAAGGATTATTGAAACATTCCCCAAGTCTAGGCACAGGTCAAGGAGTCGCAGCCCCAGGAGAAGGGACAGGGATTATAGGAGGAGGAGTCGCAGCAGGAGTTACGATAGGTATGAAAGGGATAGGTATCGTGGAAGAGAAAGAGAATCTCGTCGCAGAAGTAGGAGCCGTAGTGCAAGTCCTGATTACTACAAGAGTCGTGGAAGGGATCGCTATGATGATGAGCGTCGTAGCCATAGCCGAAGCCGAAGCCGATCTGTGGATAGTCGCTCCCCTGCACGCCGCAGCCTTAGTCCTCGAAGGAGTCCTTCACCTCAAAGGAGTGCTTCCCCTCAAAGAAGTATTTCCCCAAGGAGGAGCCCAAGGGATGAAAGCCCTGAGAGTCGTAGCCGTGATGGACGATCTCCTACACCTCACAGTGTCTCACCACGTGGTCAACCCAAGGATTCGAGAAGCCCATCCCCTCGAAATTCTAATGGAGATGAATGA 897 0.5039 MLRESSALAPTNPSLILYSLLSPSRSSALEASTMSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAERIHKGRIIETFPKSRHRSRSRSPRRRDRDYRRRSRSRSYDRYERDRYRGRERESRRRSRSRSASPDYYKSRGRDRYDDERRSHSRSRSRSVDSRSPARRSLSPRRSPSPQRSASPQRSISPRRSPRDESPESRSRDGRSPTPHSVSPRGQPKDSRSPSPRNSNGDE 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0664 298 MobiDBLite consensus disorder prediction 271 298 - -
Prci3g0664 298 SMART rrm2_1 50 123 IPR003954 GO:0003676
Prci3g0664 298 SMART rrm1_1 50 123 IPR000504 GO:0003723
Prci3g0664 298 SUPERFAMILY RNA-binding domain, RBD 40 134 IPR035979 GO:0003676
Prci3g0664 298 CDD RRM_SRSF2_SRSF8 51 123 - -
Prci3g0664 298 FunFam Serine/arginine-rich splicing factor SC35 37 136 - -
Prci3g0664 298 Gene3D - 22 136 IPR012677 -
Prci3g0664 298 MobiDBLite consensus disorder prediction 227 252 - -
Prci3g0664 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 121 IPR000504 GO:0003723
Prci3g0664 298 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 47 277 - -
Prci3g0664 298 MobiDBLite consensus disorder prediction 165 226 - -
Prci3g0664 298 MobiDBLite consensus disorder prediction 253 270 - -
Prci3g0664 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Prci3g0664 298 MobiDBLite consensus disorder prediction 136 298 - -
Prci3g0664 298 MobiDBLite consensus disorder prediction 149 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0664 Prci-Chr3 8427771 8431296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0664 47 125 Eukaryotic Initiation Factors Gene Family AT3G11400 35.443 7.38e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0664 K12891 - gmx:100778928 268.47