Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0620 ATGAGACACATGAGGAGAATTATTCCATCTTTCATGGGTGTTTTACTCCTTTGTTTAATTTTAGTGTTTGGTTTGGCGCTAAATGTTCATGGTAATGCCGAAGGTGAGGCCCTGAATGCATTTAGGACCAACGTAGCTGATCCTAACAATGTTCTTCAAAGCTGGGATGCTACCCTCGTCAATCCTTGCACATGGTTTCATGTTACATGCAATAGTGAAAATAGCGTGATCCGCGTTGATCTTGGAAATGCCGGACTTTCGGGTTCACTAGTTGCACAGCTTGGTCAACTCCCAAATCTGCAGTACTTGGAGCTTTTTAGTAACAATATAACTGGAAAAATCCCACCAGAATTTGGAAATTTGACAAATTTGGAGAGCTTGGATCTGTATGCCAATCACATATCTGGTAGCATCCCTGAATCACTGGGCAAGCTTCAAAAACTACGTTTCCTGCGTCTCAACAATAACGGCTTGACTGGAGCCATTCCCATGACCTTGACTACTGTTTATTCACTGCAAGTCCTTGATCTTTCAAGCAACAGTCTACAAGGACACATCCCAACCAATGGTTCATTTCAAGTGTTTACCTCCCTCAGTTTTGACAAAAATCCTCATTTGAACCCAATAAACATTACACCTGGACCAATTTCACCAACTCCGCCGCCATCTTCTTCAGGCAACAGTGCTACTGGAGCTATTGCGGGAGGAGTTGCTGCTGCTGCTGCTCTAATGTTTGCCGCCCCTGCCATTGCACTTGCTTATTGCCGGAAGAAGAGACCACAAGATTATTTCTTTGATGTTCCTGCTGAGGAGGACCCTGAAGTTCACCTTGGTCAGCTTAAAAAGTTTCCACTGCGTGAGCTACAAGTGGCGACAGACAACTTTAGTAACAAAAACATTCTTGGTAGAGGTGGATTTGGTAAGGTTTACAGAGGACGTTTAACTGATGGGTCTCTAGTTGCGGTGAAAAGACTTAAAGAGGAACGCACTCAGGGTGGAGAGCTGCAATTTCAAACAGAAGTAGAAATGATCAGCTTGGCTGTCCATCGTAATTTGCTCCGGCTGCGTGGTTTTTGCATGACACCAACTGAACGGTTGCTTGTGTATCCTTACATGGCTAATGGCAGTGTGGCATCATGTTTACGAGACCGCCCGGAATCAAAGCGTCCACTTGAATGGCCTGTTCGGAAGAGGATTTCACTGGGAGCTGCTAGGGGGCTTGCTTATTTGCATGACCATTGTGATCCAAAGATCATTCACCGTGATGTTAAAGCTGCAAATATATTATTGGATGAAGAATATGAAGCAGTTGTTGGGGACTTTGGCTTGGCAAAGCTAATGGGTTACAAAGACACTCATGTTACCACTGCTGTGCGTGGTACAATTGGGCACATTGCACCAGAATACCTCTCCACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGTTATGGTGTGATGCTTCTTGAACTAATAACCGGACAGAGGGCTTTCGATCTTGCACGACTCGCCAATGATGATGATGTCATGTTACTTGATTGGGTGAAAGGGCTTTTGAAAGACAAGAGATTGGAAACACTAGTGGATGCTGAATTGGAGGGTGAATATAATGAAGAGGAGGTAGAGCAACTAATCCAAGTGGCCTTGCTCTGCACGCAAAGCTCGGCTATGGAACGGCCAAAGATGTCTGAGGTGGTGAGGATGCTTGAAGGTGATGGTTTGGCTGAAAAGTGGGATCAGTGGCAGTTAGATGAGATATACAGGAGAGATCATCAAACTCTTCCCCCCCATCCGAACTGGCCGATTGTGGACTCAGGTTCACATATCCCCCCAGATGAACTGTCTGGTCCCAGATGA 1857 0.4518 MRHMRRIIPSFMGVLLLCLILVFGLALNVHGNAEGEALNAFRTNVADPNNVLQSWDATLVNPCTWFHVTCNSENSVIRVDLGNAGLSGSLVAQLGQLPNLQYLELFSNNITGKIPPEFGNLTNLESLDLYANHISGSIPESLGKLQKLRFLRLNNNGLTGAIPMTLTTVYSLQVLDLSSNSLQGHIPTNGSFQVFTSLSFDKNPHLNPINITPGPISPTPPPSSSGNSATGAIAGGVAAAAALMFAAPAIALAYCRKKRPQDYFFDVPAEEDPEVHLGQLKKFPLRELQVATDNFSNKNILGRGGFGKVYRGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISLAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRDRPESKRPLEWPVRKRISLGAARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMGYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDAELEGEYNEEEVEQLIQVALLCTQSSAMERPKMSEVVRMLEGDGLAEKWDQWQLDEIYRRDHQTLPPHPNWPIVDSGSHIPPDELSGPR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0620 618 SUPERFAMILY L domain-like 34 223 - -
Prci3g0620 618 SMART LRR_typ_2 97 120 IPR003591 -
Prci3g0620 618 SMART LRR_typ_2 169 194 IPR003591 -
Prci3g0620 618 SMART LRR_typ_2 121 145 IPR003591 -
Prci3g0620 618 SMART serkin_6 295 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci3g0620 618 SUPERFAMILY Protein kinase-like (PK-like) 275 570 IPR011009 -
Prci3g0620 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Prci3g0620 618 Gene3D Phosphorylase Kinase; domain 1 264 371 - -
Prci3g0620 618 MobiDBLite consensus disorder prediction 597 618 - -
Prci3g0620 618 Pfam Leucine Rich repeats (2 copies) 98 138 IPR025875 -
Prci3g0620 618 FunFam Somatic embryogenesis receptor kinase 1 30 218 - -
Prci3g0620 618 Gene3D Transferase(Phosphotransferase) domain 1 372 589 - -
Prci3g0620 618 FunFam Somatic embryogenesis receptor-like kinase 1 372 589 - -
Prci3g0620 618 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 15 579 - -
Prci3g0620 618 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Prci3g0620 618 Gene3D Ribonuclease Inhibitor 31 211 IPR032675 -
Prci3g0620 618 ProSiteProfiles Protein kinase domain profile. 295 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci3g0620 618 FunFam Somatic embryogenesis receptor kinase 1 264 371 - -
Prci3g0620 618 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Prci3g0620 618 Pfam Protein kinase domain 296 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0620 Prci-Chr3 7764158 7772147 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0620 5 618 Receptor kinase-like Gene Family AT4G33430 71.386 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Prci3g0620 Pkinase 3.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0620 K13416 - gmx:100800522 939.488