Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0605 ATGTCGGAAGCGGATGAGTACCGTTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGCTGAAGGATACATTTGAAAAGTTTGGCAACCTTCTTGAGGCAAAGGTGGTTGTTGACAAATTCTCTGGGCGCTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGACGCTATGAATGGGATGGATCTAGATGGTCGAACTATCACTGTCGATAAAGCTCAGCCTCAACAAGGATCTAGAGATGATGGTGATCGTTATCGTGAAAGGGGTCGTGATCGGGATCGTGATCGTAACCGAGATTATGGAGGTGGTCGAAGCTCCAACGGTGGTGAGTGTTTTAAATGCGGCAAACCTGGTCATTTTGCTAGGGAATGCCCCAATGAAGGAGCACGGGGAAGCAGGTATGGTGGCAAGGAAAGTAGATATGGTGGTAAGAGTAGTGGTGGTGGTAGTCACTATGGTCCCGATAGGAATGCAGATCGTTATTCTGGTGGTCGCAACAGGGATTCAGGTACTCATGGAGATTCTGGAAATGATCGGTACCCTCGTGATCGTGCTGGACCTTATGAACGTCGAGGACCAGGAGGCTCTCGTTCTGGATAG 633 0.4755 MSEADEYRCFIGGLAWSTSDRKLKDTFEKFGNLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDKAQPQQGSRDDGDRYRERGRDRDRDRNRDYGGGRSSNGGECFKCGKPGHFARECPNEGARGSRYGGKESRYGGKSSGGGSHYGPDRNADRYSGGRNRDSGTHGDSGNDRYPRDRAGPYERRGPGGSRSG 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0605 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Prci3g0605 210 Pfam Zinc knuckle 121 137 IPR001878 GO:0003676|GO:0008270
Prci3g0605 210 CDD RRM2_NsCP33_like 8 83 - -
Prci3g0605 210 MobiDBLite consensus disorder prediction 87 112 - -
Prci3g0605 210 SMART rrm1_1 8 81 IPR000504 GO:0003723
Prci3g0605 210 SUPERFAMILY Retrovirus zinc finger-like domains 104 139 IPR036875 GO:0003676|GO:0008270
Prci3g0605 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Prci3g0605 210 MobiDBLite consensus disorder prediction 77 210 - -
Prci3g0605 210 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 203 - -
Prci3g0605 210 Gene3D - 118 180 - -
Prci3g0605 210 ProSiteProfiles Zinc finger CCHC-type profile. 122 137 IPR001878 GO:0003676|GO:0008270
Prci3g0605 210 SUPERFAMILY RNA-binding domain, RBD 4 115 IPR035979 GO:0003676
Prci3g0605 210 FunFam Glycine-rich RNA-binding protein RZ1A 1 117 - -
Prci3g0605 210 MobiDBLite consensus disorder prediction 169 201 - -
Prci3g0605 210 Gene3D - 1 117 IPR012677 -
Prci3g0605 210 SMART c2hcfinal6 121 137 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0605 Prci-Chr3 7530516 7534290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0605 9 84 Eukaryotic Initiation Factors Gene Family AT1G22760 36.842 5.34e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0605 - - pvy:116124756 288.885