Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0571 ATGGCCGTACATTCACAGCTCAGGCTTATTGGTTACTCACAAGATATTGTAGATGGGCAGCCAATATTAGTTTCTTCCAATTGTACTCCTGTCAAGGCTTGGAAATTTGAACCTGCGGGTCATGCTTTCCATTCTGCTGTACTTAAACTTCTTGGTGTAGAGGAAGAAAACTTGGATGCTGCTGATGATAAAAAAGTGGTTGATGATAATGAACATAATTATTTTCCATCATCTGATTCTTATAGCAGCAAGAGTAAAAAGAAATCTGGTTCTGGAGACAAGCAACAAGATCACTATGCATTGTTGGGTTTGGCCCATCTAAGATACCTTGCCACAGAGGATCAAATACGTAAAAGCTATCGTGAAACTGCTTTGAGGTATCATCCTGACAAACAGGCAGCACTACTTCTTGCTGAGGAGACTGAAGCTGCAAAGCAGGCAAAGAAGGATGAGATAGAAAGTCATTTTAAGGCAATCCAGGAAGCCTATGAAGTTTTGATTGATCCTGTGAAGAGAAGAATCTATGATTCCACAGATGAATTTGATGATGAGATCCCTACTGACTGCACCCTACAAGACTTCTTCAAGGTCTTTGGTCCCGCTTTTATGAGGAATGGGAGGTGGTCAGTTAATCAACCTGTTCCATCTTTGGGTGATAACAAGACTCCATTAAAAGAAGTTGATAATTTCTACAGTTTCTGGTACACCTTCAAAAGCTGGAGAGAATTCCCTCATGCTGATGAATTTGATCTTGAGCAAGCTGAATCTCGAGACCACAGGAGGTGGATGGAAAGGCAGAATGCTAAATTGTCAGAAAAAGCAAGGAAGGAAGAATCTGCGAGGATACGTGCTCTTGTTGATAATGCTTATAAAAGAGATCCTAGAATACTGAAGAGGAAGGAAGAGGAAAAAGCTGAGAAGCAAAGAAAAAAGGATGCTAAGTTACTTGCAAAGAGGCTGCAGGAAGAAGAAGCTGCTAGAATTGCAGAAGGGGAGAAGCGGCAAAAGGAGGAGGAAGAGAAACGAGCTGCAGAAGCTGCTTTACAACAGAAGAAGTTGAAGGAGAAAGAGAAAAAGCTCTTGCGAAAAGAGCGTGCTCGTCTACGAACACTTTCAGGACATATCACATCACAAAATTTACTTGGTATATCTGAGGATGATATAGAAGGTCTTTGTATGTCACTTGATACTGAGCAGTTGAGGTGTTTGTGTGAGAAAATGGATGGCTTACAGATGCTAGAACAAGCAAAAGTTCTCAGAGAAGCACATGATTACAAAAAAGATGGAGAAAATAAGAAAGGAGAAGAAACAACTGATCAACATAATGGTTCTGTCAAGGCTAATGGGAGTGCCTCACTGGGAAACTTGGAGAGGAAGGAAAAACCTTGGAGTAAGGAAGAGATTGATCTATTAAGAAAGGGAATGGTAAAATATCCCAAAGGAACTTCACGAAGATGGGAAGTTATTTCAGAGTATATTGGTACTGGACGATCTGTGGAAGAAATCATGAAGGCAACGAAAACAGTTCTCCTCCAGAAGCCTGATTCCTCCAAATCCTTTGATGCTTTTCTTGAGAAAAGGAAACCTGCACAATCAATTGCATCTCCACTCACAACTAGAGCAGAGTTAGAAGGGGAATCAACTCCTGTGATCTCCCATAGTGATGCTTCCTCGACAACAAATAACCCGGAGGACTCTAGCAGCAAAATTGCTGACAACCAAGTCTCCTCTGGTTCAGTAACTGCAAATGGAGTATCCTCTAATTCAGACCAAGATGTCTGGTCAGCTGTACAGGAGAGAGCATTGGTTCAGGCTTTGAAAGCCTTCCCGAAGGAAACTCCCCAGCGATGGGAAAGAGTTGCAGCAGCCGTCCCAGGAAAGACTATGAACCAGTGCAAGAAAAAATTTGCATTGATGAAGGAGAACTTCAGAAACAAGAAAAATGCAGGTTGA 1953 0.4173 MAVHSQLRLIGYSQDIVDGQPILVSSNCTPVKAWKFEPAGHAFHSAVLKLLGVEEENLDAADDKKVVDDNEHNYFPSSDSYSSKSKKKSGSGDKQQDHYALLGLAHLRYLATEDQIRKSYRETALRYHPDKQAALLLAEETEAAKQAKKDEIESHFKAIQEAYEVLIDPVKRRIYDSTDEFDDEIPTDCTLQDFFKVFGPAFMRNGRWSVNQPVPSLGDNKTPLKEVDNFYSFWYTFKSWREFPHADEFDLEQAESRDHRRWMERQNAKLSEKARKEESARIRALVDNAYKRDPRILKRKEEEKAEKQRKKDAKLLAKRLQEEEAARIAEGEKRQKEEEEKRAAEAALQQKKLKEKEKKLLRKERARLRTLSGHITSQNLLGISEDDIEGLCMSLDTEQLRCLCEKMDGLQMLEQAKVLREAHDYKKDGENKKGEETTDQHNGSVKANGSASLGNLERKEKPWSKEEIDLLRKGMVKYPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKSFDAFLEKRKPAQSIASPLTTRAELEGESTPVISHSDASSTTNNPEDSSSKIADNQVSSGSVTANGVSSNSDQDVWSAVQERALVQALKAFPKETPQRWERVAAAVPGKTMNQCKKKFALMKENFRNKKNAG 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0571 650 CDD SANT 462 504 IPR001005 -
Prci3g0571 650 ProSiteProfiles dnaJ domain profile. 97 179 IPR001623 -
Prci3g0571 650 Pfam DnaJ domain 97 176 IPR001623 -
Prci3g0571 650 MobiDBLite consensus disorder prediction 327 348 - -
Prci3g0571 650 Gene3D - 584 650 - -
Prci3g0571 650 MobiDBLite consensus disorder prediction 550 588 - -
Prci3g0571 650 SUPERFAMILY Chaperone J-domain 95 203 IPR036869 -
Prci3g0571 650 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 9 649 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Prci3g0571 650 SMART dnaj_3 96 171 IPR001623 -
Prci3g0571 650 Gene3D - 456 513 - -
Prci3g0571 650 ProSiteProfiles Myb-like domain profile. 455 510 IPR001005 -
Prci3g0571 650 ProSiteProfiles Myb-like domain profile. 586 636 IPR001005 -
Prci3g0571 650 SUPERFAMILY Homeodomain-like 592 647 IPR009057 -
Prci3g0571 650 Gene3D DnaJ domain 80 190 IPR036869 -
Prci3g0571 650 PRINTS DnaJ domain signature 120 135 IPR001623 -
Prci3g0571 650 PRINTS DnaJ domain signature 151 171 IPR001623 -
Prci3g0571 650 PRINTS DnaJ domain signature 102 120 IPR001623 -
Prci3g0571 650 SMART sant 459 512 IPR001005 -
Prci3g0571 650 SMART sant 590 642 IPR001005 -
Prci3g0571 650 MobiDBLite consensus disorder prediction 62 94 - -
Prci3g0571 650 ProSiteProfiles SANT domain profile. 589 644 IPR017884 -
Prci3g0571 650 Pfam Myb-like DNA-binding domain 593 636 IPR001005 -
Prci3g0571 650 FunFam Myb family transcription factor 588 648 - -
Prci3g0571 650 CDD SANT 594 640 IPR001005 -
Prci3g0571 650 ProSitePatterns Nt-dnaJ domain signature. 156 175 IPR018253 -
Prci3g0571 650 CDD DnaJ 97 168 IPR001623 -
Prci3g0571 650 MobiDBLite consensus disorder prediction 424 440 - -
Prci3g0571 650 MobiDBLite consensus disorder prediction 424 460 - -
Prci3g0571 650 Coils Coil 297 371 - -
Prci3g0571 650 MobiDBLite consensus disorder prediction 531 588 - -
Prci3g0571 650 SUPERFAMILY Homeodomain-like 461 505 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0571 Prci-Chr3 7113462 7117112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0571 89 297 C2H2 Transcription Factor Family AT1G74250 29.032 2.38e-19 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci3g0571 DnaJ 7.8e-18 CL0392