Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0552 ATGAAGCAAGTTGATGATGATAATGGATCATCTTCATCCAGCAAGAAGGTGAATTATGTGAAAGCTCCAAACAAGTTTGACTTGAATCTCTTGCCAGAAGATTCAGAAAGTGATGATGATGATGATGATGAATTTTACATTGAAATTTTTGGAAGTAGCGTTGAAACCCCTCAAGCTGCTCTGAATCTCACCGATAATGAAGTGAATGGAAATTCAAACGGATTGGTTCCACTAATTCATGTTTCTGGAGAAAATGCTGTTTCCAACTTCAAGAACATCACAACTTCCTCAGAAACAAAAATGGTGCAAACACCCTCCAATCCTTCTGATGATAAGAGGAGAGTTCACAGTGATGACAGCTCTTCGGCCAGCGGTGCCGCGACTAGCTTACGTCCTCGCCGGCCAGAGCCAAACTACGATCGGCGAATCTGCACAAATTACAAGTGCCGGACAAGAAACACTCCCATGTGGCGTAGGGGACCTCTAGGTCCAAAGGAAATAGGAAAGGTTTACAAAAACCTTGTAACCAAAAAGCACTCTGATAAAAGTTCTCGCAAGGATAAACACTATGAGGAATCATCTGCAACACCTACAGGTTCAGGGATTAATCGTCATTATGGGGGTGGTGATGATGATTTATTTACAAGTCCTGCAATTTTGTCAAGAGATGCAATCTGTATCAAGGAGTGCGAGTACAAGTTTTGCCCTGAATCAGAAAGATCGGGGAATGTGAGCAGAAGAAGAGGTACCTCCATTATTGAACCTTCAAGCCCTGCAGAATCCTTATCAAGAAACAGAAGCAGAGCCAGACACAGCGTATCTGAACTTCAGATACGAAGCTGGACCTCTGCAGCCTCCCCATCATCAAGAGATGCTGGCACCAATAGACTGTCAGCAAATGACATCCCGGCAGCCTCTTTGTCAAGAGACACAAGCCGGAGGTCCACAACACCCATCATATTCTCGCAATCCACTGTTCGAAGGAAACCCCAGCCAATAGAGAAGAAGTTGGAGTGCACACTTGAAGATTTATACTTTGGATGCCTCAAAAAGATCAAAATTACCAGAGATGTTATCAAGCCTCCTGGGGTTATCCTCCAAGAGGAGGAGGTACTACAGATTGAAGTCAAGCCGGGATGGAGAGAAGGAACAAAGATTACCTTCGAGGAAAAGGGTAACGAGGAACCTGGATACCTCCCTGCTGATATAATCTTCTCAATTGAAGAAAAGGAACACCCTTTGTTTACAAGAGATGGCTACAATTTGGAAGTATGTGTTGAGATTCCCCTAGTAAATGCACTCACCGGCTGCTTAATACCAGTTCCTCTGATTGAAGGGGAAACCATGAATGTGACATTTGAGAATATCATCATATGCCCTGGATATGTGAAGGTCCTTCAGGGTAAAGGCATGCCGGATCCACAACATAATGGGAGGAGAGGCAACCTCCACATCAAATTCCTCATCGACTTCCCTAGGACATTGAGTGATGAACAAAAGAAAGAAGTTGTTAGTATTCTACAAGATTGTAACTGA 1536 0.4362 MKQVDDDNGSSSSSKKVNYVKAPNKFDLNLLPEDSESDDDDDDEFYIEIFGSSVETPQAALNLTDNEVNGNSNGLVPLIHVSGENAVSNFKNITTSSETKMVQTPSNPSDDKRRVHSDDSSSASGAATSLRPRRPEPNYDRRICTNYKCRTRNTPMWRRGPLGPKEIGKVYKNLVTKKHSDKSSRKDKHYEESSATPTGSGINRHYGGGDDDLFTSPAILSRDAICIKECEYKFCPESERSGNVSRRRGTSIIEPSSPAESLSRNRSRARHSVSELQIRSWTSAASPSSRDAGTNRLSANDIPAASLSRDTSRRSTTPIIFSQSTVRRKPQPIEKKLECTLEDLYFGCLKKIKITRDVIKPPGVILQEEEVLQIEVKPGWREGTKITFEEKGNEEPGYLPADIIFSIEEKEHPLFTRDGYNLEVCVEIPLVNALTGCLIPVPLIEGETMNVTFENIIICPGYVKVLQGKGMPDPQHNGRRGNLHIKFLIDFPRTLSDEQKKEVVSILQDCN 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0552 511 MobiDBLite consensus disorder prediction 245 263 - -
Prci3g0552 511 Pfam DnaJ C terminal domain 333 492 IPR002939 -
Prci3g0552 511 Gene3D - 328 410 - -
Prci3g0552 511 MobiDBLite consensus disorder prediction 238 316 - -
Prci3g0552 511 FunFam Dnaj homolog subfamily b member 329 410 - -
Prci3g0552 511 Gene3D - 411 510 - -
Prci3g0552 511 SUPERFAMILY HSP40/DnaJ peptide-binding domain 326 422 IPR008971 GO:0006457|GO:0051082
Prci3g0552 511 FunFam DnaJ subfamily B member 13 412 493 - -
Prci3g0552 511 MobiDBLite consensus disorder prediction 175 208 - -
Prci3g0552 511 MobiDBLite consensus disorder prediction 274 316 - -
Prci3g0552 511 MobiDBLite consensus disorder prediction 175 193 - -
Prci3g0552 511 SUPERFAMILY HSP40/DnaJ peptide-binding domain 415 501 IPR008971 GO:0006457|GO:0051082
Prci3g0552 511 MobiDBLite consensus disorder prediction 95 140 - -
Prci3g0552 511 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 165 508 - -
Prci3g0552 511 CDD DnaJ_C 331 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0552 Prci-Chr3 6898287 6906056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0552 144 167 C2C2-Gata Transcription Factor Family AT3G20750 70.833 4.79e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0552 K09519 - gmx:100799984 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g0552 3 6898287 6906056 Prci3g0552 3 6898287 6906056 ECH