Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0489 ATGTGCAAAGAAATTGTCAAGAGCCCAGAGACTAGTGGCAAGCTTACTTTCCTCGTGTCCTTGAAACAGCCAGGATCACGAGATGGAACCATTCAGTGTTTTATCAAGAGAGATAAATCAAATTTAACATACCACCTTTTCCTTTGTCTCAACCCTGCTTTGTTAGCTGAAAATGGAAAATTCCTCCTTTCTGCCAAGAGGATTAGAAGAACAACATACACAGAGTATGTTATTTCCATGGATGCCGGCAATATCTCTAGATCAAGTAGCTCTTACATTGGAAAGCTAAGATCAAACTTTCTGGGTACCAAATTTATAATATATGATACACAGCCTCCATACAATTCCACCCATATCCCGCCTTCGGGGAGGACAAGCCGAAGGTTTTATTCAAAAAAGGTTTCACTAAAGGTCCCATCTGGAAGTTGCAACATAGCTCAAGTAACATATGAATTGAATGTGCTTGGAACACGTGGCCCAAGGAAGATGCACTGTGTTATGCATTCGATAACAGCATCAGCGCTCAATGCTGGTGGAACGGTCCCTGGCCAACCTGAGGTTCTTCCTCACCCCATGGAGGACTCATTCCGGAGCATCTCCTTTTCAAAATTTTTAGATCACTCTATTGAGTTCAGCAGCTCAAGATTCTCCGAGTTTGGGGAAGGCTGCAATGAGGACGATGATGGCAAGATGAGGCCATTGGTTCTGAAAAACAAACCTCCAAGATGGCATGAACAATTGCAATGTTGGTGCCTTAACTTCCGTAGCCGAGTAACAGTTGCATCAGTTAAAAACTTTCAGTTGATTGCTGCTACCCAGCCGGCAGCCGGTGATCCTACCCCATCTCAGCCGGCGCTCTCCGGGCAAGATAAGATAATTCTGCAGTTTGGTAAAGTTGGGAAAGACATGTTCACCATGGATTATCGGTATCCTCTATCAGCTTTCCAGGCTTTTGCGATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAA 999 0.4404 MCKEIVKSPETSGKLTFLVSLKQPGSRDGTIQCFIKRDKSNLTYHLFLCLNPALLAENGKFLLSAKRIRRTTYTEYVISMDAGNISRSSSSYIGKLRSNFLGTKFIIYDTQPPYNSTHIPPSGRTSRRFYSKKVSLKVPSGSCNIAQVTYELNVLGTRGPRKMHCVMHSITASALNAGGTVPGQPEVLPHPMEDSFRSISFSKFLDHSIEFSSSRFSEFGEGCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRSRVTVASVKNFQLIAATQPAAGDPTPSQPALSGQDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0489 332 Gene3D Tubby Protein; Chain A 16 332 IPR025659 -
Prci3g0489 332 Pfam Tub family 21 327 IPR000007 -
Prci3g0489 332 PRINTS Tubby superfamily signature 142 169 IPR000007 -
Prci3g0489 332 PRINTS Tubby superfamily signature 92 116 IPR000007 -
Prci3g0489 332 PRINTS Tubby superfamily signature 76 92 IPR000007 -
Prci3g0489 332 PRINTS Tubby superfamily signature 310 332 IPR000007 -
Prci3g0489 332 PRINTS Tubby superfamily signature 254 270 IPR000007 -
Prci3g0489 332 PRINTS Tubby superfamily signature 289 308 IPR000007 -
Prci3g0489 332 PRINTS Tubby superfamily signature 236 253 IPR000007 -
Prci3g0489 332 PANTHER TUBBY-RELATED 1 330 - -
Prci3g0489 332 SUPERFAMILY Tubby C-terminal domain-like 9 332 IPR025659 -
Prci3g0489 332 ProSitePatterns Tub family signature 2. 317 332 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0489 Prci-Chr3 6354494 6359497 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0489 1 332 TUB Transcription Factor Family AT1G43640 68.023 3.78e-166 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci3g0489 Tub 5e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0489 K19600 - gmx:100814578 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci3g0489 3 6354494 6359497 Prci3g0489 3 6354494 6359497 ECH