Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0488 ATGTCGTTCCGGAGTATAGTCCGTGATGTGAGAGATAGCTTAGGGAGCTTATCTAGACGGAGCTTTGATGTGCGGCTGACTGGCCATCACAGAGGAAAATCTCACGGTGCTATACATGATCAGCCAGAAGTAATTGAAAATGGTTGCTGGGCTAGCTTGCCCCCAGAATTGTTATATGATATCATTAGAAGGCTAGAAGAGAGTGAAAGTACATGGCCTGCTCGAAAGCATGTTGTTGCATGTAGTGCAGTATGCCGGTCGTGGAGGAATATGTGCAAAGAAATTGTCAAGAGCCCAGAGACTAGTGGCAAGCTTACTTTCCTCGTGTCCTTGAAACAGCCAGGATCACGAGATGGAACCATTCAGTGTTTTATCAAGAGAGATAAATCAAATTTAACATACCACCTTTTCCTTTGTCTCAACCCTGCTTTGTTAGCTGAAAATGGAAAATTCCTCCTTTCTGCCAAGAGGATTAGAAGAACAACATACACAGAGTATGTTATTTCCATGGATGCCGGCAATATCTCTAGATCAAGTAGCTCTTACATTGGAAAGCTAAGATCAAACTTTCTGGGTACCAAATTTATAATATATGATACACAGCCTCCATACAATTCCACCCATATCCCGCCTTCGGGGAGGACAAGCCGAAGGTTTTATTCAAAAAAGGTTTCACTAAAGGTCCCATCTGGAAGTTGCAACATAGCTCAAGTAACATATGAATTGAATGTGCTTGGAACACGTGGCCCAAGGAAGATGCACTGTGTTATGCATTCGATAACAGCATCAGCGCTCAATGCTGGTGGAACGGTCCCTGGCCAACCTGAGGTTCTTCCTCACCCCATGGAGGACTCATTCCGGAGCATCTCCTTTTCAAAATTTTTAGATCACTCTATTGAGTTCAGCAGCTCAAGATTCTCCGAGTTTGGGGAAGGCTGCAATGAGGACGATGATGGCAAGATGAGGCCATTGGTTCTGAAAAACAAACCTCCAAGATGGCATGAACAATTGCAATGTTGGTGCCTTAACTTCCGTAGCCGAGTAACAGTTGCATCAGTTAAAAACTTTCAGTTGATTGCTGCTACCCAGCCGGCAGCCGGTGATCCTACCCCATCTCAGCCGGCGCTCTCCGGGCAAGATAAGATAATTCTGCAGTTTGGTAAAGTTGGGAAAGACATGTTCACCATGGATTATCGGTATCCTCTATCAGCTTTCCAGGCTTTTGCGATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAA 1269 0.446 MSFRSIVRDVRDSLGSLSRRSFDVRLTGHHRGKSHGAIHDQPEVIENGCWASLPPELLYDIIRRLEESESTWPARKHVVACSAVCRSWRNMCKEIVKSPETSGKLTFLVSLKQPGSRDGTIQCFIKRDKSNLTYHLFLCLNPALLAENGKFLLSAKRIRRTTYTEYVISMDAGNISRSSSSYIGKLRSNFLGTKFIIYDTQPPYNSTHIPPSGRTSRRFYSKKVSLKVPSGSCNIAQVTYELNVLGTRGPRKMHCVMHSITASALNAGGTVPGQPEVLPHPMEDSFRSISFSKFLDHSIEFSSSRFSEFGEGCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRSRVTVASVKNFQLIAATQPAAGDPTPSQPALSGQDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0488 422 CDD F-box_AtTLP-like 50 94 - -
Prci3g0488 422 ProSitePatterns Tub family signature 2. 407 422 IPR018066 -
Prci3g0488 422 Pfam Tub family 111 417 IPR000007 -
Prci3g0488 422 Gene3D Tubby Protein; Chain A 106 422 IPR025659 -
Prci3g0488 422 SUPERFAMILY F-box domain 45 94 IPR036047 GO:0005515
Prci3g0488 422 Pfam F-box domain 50 97 IPR001810 GO:0005515
Prci3g0488 422 PRINTS Tubby superfamily signature 400 422 IPR000007 -
Prci3g0488 422 PRINTS Tubby superfamily signature 182 206 IPR000007 -
Prci3g0488 422 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Prci3g0488 422 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Prci3g0488 422 PRINTS Tubby superfamily signature 166 182 IPR000007 -
Prci3g0488 422 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Prci3g0488 422 PRINTS Tubby superfamily signature 379 398 IPR000007 -
Prci3g0488 422 PANTHER TUBBY-RELATED 41 420 - -
Prci3g0488 422 SUPERFAMILY Tubby C-terminal domain-like 99 422 IPR025659 -
Prci3g0488 422 Gene3D - 44 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0488 Prci-Chr3 6354494 6359497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0488 1 422 TUB Transcription Factor Family AT1G76900 68.478 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci3g0488 Tub 1.2e-113 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0488 K19600 - gmx:100814578 741.88