Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0437 ATGAGAAGTACTACAGATGAAGATGCTGAGGAGAGAAACTTCAGTCTGCAGAATCAGCTGGTGGGTGTGAAGACTAAAGGAAGGCAATTTCAAGGAACAGGACTTCAGAAATCAACCAAAGCAAAATTGAAATTTTCTGAGCAAATATCTGAAGACACCATGGGAACAAGAATTTTCAACAAAGTTAAATGTGTGAATTCTGAGCATAGACAGAAAAACGTATTAGCTGCCGTGGAAAAGAACAGAGCTTTGGATGTTGCCAGATCTTTCAAATATGATAATCCCTTTTTCACGTTAGTCATGCAGCGTTCATATATCGGTTCTGGTTGTTACTTGTCAATGCCAAAAGACTTTGCTGCAAAACATTTGAAGGAAGAATGTGTTGTGCAACTTCAGACCTTGGATGGCAGAACTTGGCCTGCTAAGTTTAAAGTTCCTAAAATTGGAGAAGGCTGGAGGAAGTTTGTGAAGGAAAATGGTTTGAAAGTGGGGGATGTTTGTGTATTTGAAATCATTGATCTCTCATTCAAAGTACATATTTTTAGAGATGCTGAAAAAGGAGATCTGAAAGTTAATGCTTTTGAAAAGGAGCAGAGCAGCTGTATGCAAGATCCACCTCTTGAAAAGGAGAGCTCTTCCATATCTGAAAATCCTCGTTTTGTGGCTTTGATGACACACACTCACATATATGGCACATCATACTTGCATGTGCCCATAGATTTTGCAAAAGCTCATCTTCATAACAGGACTAAGAGTGTCACATTTCATGTCCAAGATAAAGATTGGACTGTTGGGTATGCATTCAGAAGTTTTGATAAACAACAAATTGCTGCATTTACTTGGGGATGGAAGCAATTTTGTAAGGATAATGATTTGAAAGTAGGTGATGTTTGTGACTTTGAGCTCACTCAGAAATCCAAATTTCAAGTGACAACTTTTCGGGCGACCACTTAA 954 0.3847 MRSTTDEDAEERNFSLQNQLVGVKTKGRQFQGTGLQKSTKAKLKFSEQISEDTMGTRIFNKVKCVNSEHRQKNVLAAVEKNRALDVARSFKYDNPFFTLVMQRSYIGSGCYLSMPKDFAAKHLKEECVVQLQTLDGRTWPAKFKVPKIGEGWRKFVKENGLKVGDVCVFEIIDLSFKVHIFRDAEKGDLKVNAFEKEQSSCMQDPPLEKESSSISENPRFVALMTHTHIYGTSYLHVPIDFAKAHLHNRTKSVTFHVQDKDWTVGYAFRSFDKQQIAAFTWGWKQFCKDNDLKVGDVCDFELTQKSKFQVTTFRATT 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0437 317 ProSiteProfiles B3 DNA-binding domain profile. 97 184 IPR003340 GO:0003677
Prci3g0437 317 ProSiteProfiles B3 DNA-binding domain profile. 220 316 IPR003340 GO:0003677
Prci3g0437 317 CDD B3_DNA 218 314 IPR003340 GO:0003677
Prci3g0437 317 SUPERFAMILY DNA-binding pseudobarrel domain 215 315 IPR015300 -
Prci3g0437 317 Gene3D - 75 186 IPR015300 -
Prci3g0437 317 Gene3D - 202 317 IPR015300 -
Prci3g0437 317 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 67 186 IPR044837 -
Prci3g0437 317 SUPERFAMILY DNA-binding pseudobarrel domain 93 181 IPR015300 -
Prci3g0437 317 CDD B3_DNA 95 182 IPR003340 GO:0003677
Prci3g0437 317 Pfam B3 DNA binding domain 97 182 IPR003340 GO:0003677
Prci3g0437 317 Pfam B3 DNA binding domain 220 315 IPR003340 GO:0003677
Prci3g0437 317 SMART B3_2 97 185 IPR003340 GO:0003677
Prci3g0437 317 SMART B3_2 220 316 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0437 Prci-Chr3 5541573 5544305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0437 217 314 REM Transcription Factor Family AT1G49480 31.000 2.79e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci3g0437 B3 1.2e-14 CL0405