Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0436 ATGAGAAGTACTACAGATGAAGATGCTGAGGAGAGAAACTTCAGTCTGCAGAATCAGCTGGTGGGTGTGAAGACTAAAGGAAGGCAATTTCAAGGAACAGGACTTCAGAAATCAACCAAAGCAAAATTGAAATTTTCTGAGCAAATATCTGAAGAAGACACCATGGGAACAAGAATTTTCAACAAAGTTAAATGTGTGAATTCTGAGCATAGACAGAAAAACGTATTAGCTGCCGTGGAAAAGAACAGAGCTTTGGATGTTGCCAGATCTTTCAAATATGATAATCCCTTTTTCACGTTAGTCATGCAGCGTTCATATATCGGTTCTGGTTGTTACTTGTCAATGCCAAAAGACTTTGCTGCAAAACATTTGAAGGAAGAATGTGTTGTGCAACTTCAGACCTTGGATGGCAGAACTTGGCCTGCTAAGTTTAAAGTTCCTAAAATTGGAGAAGGCTGGAGGAAGTTTGTGAAGGAAAATGGTTTGAAAGTGGGGGATGTTTGTGTATTTGAAATCATTGATCTCTCATTCAAAGTACATATTTTTAGAGATGCTGAAAAAGGAGATCTGAAAGTTAATGCTTTTGAAAAGGAGCAGAGCAGCTGTATGCAAGATCCACCTCTTGAAAAGGAGAGCTCTTCCATATCTGAAAATCCTCGTTTTGTGGCTTTGATGACACACACTCACATATATGGCACATCATACTTGCATGTGCCCATAGATTTTGCAAAAGCTCATCTTCATAACAGGACTAAGAGTGTCACATTTCATGTCCAAGATAAAGATTGGACTGTTGGGTATGCATTCAGAAGTTTTGATAAACAACAAATTGCTGCATTTACTTGGGGATGGAAGCAATTTTGTAAGGATAATGATTTGAAAGTAGGTGATGTTTGTGACTTTGAGCTCACTCAGAAATCCAAATTTCAAGTGACAACTTTTCGGGCGACCACTTAA 957 0.3845 MRSTTDEDAEERNFSLQNQLVGVKTKGRQFQGTGLQKSTKAKLKFSEQISEEDTMGTRIFNKVKCVNSEHRQKNVLAAVEKNRALDVARSFKYDNPFFTLVMQRSYIGSGCYLSMPKDFAAKHLKEECVVQLQTLDGRTWPAKFKVPKIGEGWRKFVKENGLKVGDVCVFEIIDLSFKVHIFRDAEKGDLKVNAFEKEQSSCMQDPPLEKESSSISENPRFVALMTHTHIYGTSYLHVPIDFAKAHLHNRTKSVTFHVQDKDWTVGYAFRSFDKQQIAAFTWGWKQFCKDNDLKVGDVCDFELTQKSKFQVTTFRATT 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0436 318 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 55 186 IPR044837 -
Prci3g0436 318 SUPERFAMILY DNA-binding pseudobarrel domain 94 182 IPR015300 -
Prci3g0436 318 Gene3D - 76 187 IPR015300 -
Prci3g0436 318 Gene3D - 203 318 IPR015300 -
Prci3g0436 318 ProSiteProfiles B3 DNA-binding domain profile. 98 185 IPR003340 GO:0003677
Prci3g0436 318 ProSiteProfiles B3 DNA-binding domain profile. 221 317 IPR003340 GO:0003677
Prci3g0436 318 Pfam B3 DNA binding domain 98 183 IPR003340 GO:0003677
Prci3g0436 318 Pfam B3 DNA binding domain 221 316 IPR003340 GO:0003677
Prci3g0436 318 CDD B3_DNA 219 315 IPR003340 GO:0003677
Prci3g0436 318 SMART B3_2 98 186 IPR003340 GO:0003677
Prci3g0436 318 SMART B3_2 221 317 IPR003340 GO:0003677
Prci3g0436 318 SUPERFAMILY DNA-binding pseudobarrel domain 216 316 IPR015300 -
Prci3g0436 318 CDD B3_DNA 96 183 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0436 Prci-Chr3 5541573 5544305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0436 218 315 REM Transcription Factor Family AT1G49480 31.000 2.84e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci3g0436 B3 1.2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0436 - - pcin:129304489 652.129