Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0435 ATGGCCCTTGCATATTGGCATAATGAGCTACTAGCAAACACAACTTCACAGAGGAATCCAAACAAATTTACTGGGAGATATGGAAGTTGTTTGTCAAGCCCAGTGTTTCTAAAGCCTCCTGATGGGAAAGAGTGGAAAGTGCATTGGACCAAACATGATAATGAGGTTTGGTTTCAAGATGATTGGATGGAATTTGCTAGCCTTTTCTCTCTGGACGAAGGGCATTTGGTTTTGTTCAAATATGAAGGAACTTGTCAGTTTGATGTACTCATATTCAATAACTGCGCGCTAGAAATAGACTATCTTTCTTCATCTAAAAATAATCTCAGTGATGATACTGTTGAAGCCTTGGATGACATGCCTGCAAACCGAAAGGCTGTGCGCAAAACACCTTTGTCATCTTCTAGGCCTTGTAAGAAAATGAGGAGTCTGCAGAATTTGCCGGTGGCCTTCAAAACTAATCCCGGTCAGTGTCAAGGAACAGAATTCCAGAAATCAACCAATGCAGAATTGAAGCTTTGTAAGCAGGAACCAGAGGGTGGTGCCAACAAATTTGCTGAAAGACATTTGAAGAAAGACTGTGGTGTTGTGCAACTTGAGGCCTTAGATGGGAGAACTTGGCCTGCCCGGTATAAGATTCCAAGAATCGAAGATGGATGGGAGAAGTTTGTAATGAAAAATGATTTGAAATGGGTCAAGAAGAGGACTTGCAATCTTGCAGAAGATCTGAAAGCTATTCCTTTTAAAAAGGAGCAGATCAGCAGTATGCAACAGACTAGTTCTTTCAAATATGAAAATCCTCATTTTATGGATGTGCCATCACAATTTTCAAGAACACATCTTCATGACTGTACTAAGAGTGTCAAACTTCTTGTACAAGATGCAGATTGGCCTGTTGAGTACGTAGTTAGAATAACTTATCCAGGAAGTCAAGTTCGTGAATTTTCTTGTGGATGGAAGCGATTTTGCCAGGATAATGCCTTGAAATTGGGGAGCAGGAAGCCAACACAGTTCATTGCAGCTTAG 1026 0.4084 MALAYWHNELLANTTSQRNPNKFTGRYGSCLSSPVFLKPPDGKEWKVHWTKHDNEVWFQDDWMEFASLFSLDEGHLVLFKYEGTCQFDVLIFNNCALEIDYLSSSKNNLSDDTVEALDDMPANRKAVRKTPLSSSRPCKKMRSLQNLPVAFKTNPGQCQGTEFQKSTNAELKLCKQEPEGGANKFAERHLKKDCGVVQLEALDGRTWPARYKIPRIEDGWEKFVMKNDLKWVKKRTCNLAEDLKAIPFKKEQISSMQQTSSFKYENPHFMDVPSQFSRTHLHDCTKSVKLLVQDADWPVEYVVRITYPGSQVREFSCGWKRFCQDNALKLGSRKPTQFIAA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0435 341 ProSiteProfiles B3 DNA-binding domain profile. 255 341 IPR003340 GO:0003677
Prci3g0435 341 Gene3D - 180 235 IPR015300 -
Prci3g0435 341 Gene3D - 236 333 IPR015300 -
Prci3g0435 341 CDD B3_DNA 184 230 IPR003340 GO:0003677
Prci3g0435 341 Gene3D - 8 95 IPR015300 -
Prci3g0435 341 Pfam B3 DNA binding domain 20 92 IPR003340 GO:0003677
Prci3g0435 341 SUPERFAMILY DNA-binding pseudobarrel domain 260 331 IPR015300 -
Prci3g0435 341 CDD B3_DNA 20 93 IPR003340 GO:0003677
Prci3g0435 341 SUPERFAMILY DNA-binding pseudobarrel domain 184 230 IPR015300 -
Prci3g0435 341 CDD B3_DNA 268 331 IPR003340 GO:0003677
Prci3g0435 341 PANTHER B3 DOMAIN-CONTAINING 18 230 - -
Prci3g0435 341 ProSiteProfiles B3 DNA-binding domain profile. 20 95 IPR003340 GO:0003677
Prci3g0435 341 SUPERFAMILY DNA-binding pseudobarrel domain 20 93 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0435 Prci-Chr3 5519202 5522657 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0435 1 105 B3 DNA Binding Superfamily AT3G18990 38.889 3.90e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci3g0435 B3 5.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0435 - - pcin:129304695 719.539