Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0434 ATGGCTTCTCATTCTCACCCTTCCAGCCCTATCTGTTTCTTCAAGATCATCTTGAAATCCAATCTTGAATCCATTAGGATTCCAAACAAATTTACTGGGAGATATGGAAGTGGTTTGTCAAACCCAGTGTTTCTAAAGCCTCCTGATGGGAAAGAGTGGAAAATGCATCAGACAAAACATGACAATGAGATTTGGTTTCAAGAGGGTTGGAAGGAATTTGCCAGCTTTTACTCTTTGGATGAAGGGCATTTGGTTTTGTTCAAATATGAAGGAACTTGTCAGTTTGATGTACACATATTCGATAAGAGTGCACTAGAAATAGACTATCCTTCTTCATCTAAGAATAATCTCAGTGATGATACACTTGAAATCTTGGATGAGATGCCTCCAAACCAAAAGGCTACGCACAAAACGCCTTTGTCATCTTCTAGGCCTTGTAAGAAAATGAGAAGTCTGCAGAATTTGCCGGTGGCCTTCAAAACTAATCCCGGCCAGTGTCAAGGAACAGAGTTCCAGAAATCAACCAATGCAGAATTGAAGCTTTGTAAGCAGGAACCAGAGGATGATGGGGAATCAGGAATTTTTACCAAGAGTACTGCCTGCTTGAATTCTGAGCAAAGAAGGAAGAAAGCGACAACTACCGTGGAAAAGATCAGAGCTTTAATCAGTGCCAGTTCTTTCAAATCTGAAAATCCCTTTTTCAAGGTGATGCCTATAAAATTTGCTAAAAGACATTTGAAGAAAGAGTGTGGTGTTGTGCAACTTGAGGTCTTGGATGGGAGAACTTGGCCTGCTAGGTATAAGATTCCCATAATTGGAGTTGGATGGGAGAAATTTGTAATGGATAATGGTTTGAACGTGGGTCATGTTTGTGTTTTTGAAATGATCGGTCGCACATTCAAAGTACATATTTTCAGAGACGATGAAGAAGGAAATCTGAATGTTATTCCTTTTAAAGATGAGCAAATCAGCAGTTTGCAACAGACTCCTCTTGAAGAGGCTAGCTCTTTCAAATCTGAACATCCTCATTTTATGGTTAAGATGACACATGCTTACATTTTTCGTGGCTCAAACTTGCATGTGCCAACAAAATTTGCAAGAACACATTTTGATAAGAGTACTAAGAGCGCCAAGCTTGTTGTAAAAGATGTAGCTTGGCCTATTGGTTGCATATTCAGAAGAGATTCTCATGGATGTCAACTTCATGAATTTTCTTCTCGGGGATGGAAGCAATTTCGTGCAGATAATGATTTAAAAGTAGGAGATGTTTGTGTCTTTGAGCTCATTCCAGAAACAGAGTTCAAACTTACATTTCAAGTTACAATCTTTGGAGCCACTAAACACCCAATTCAATCATCCAACTCAGCTTAA 1371 0.3917 MASHSHPSSPICFFKIILKSNLESIRIPNKFTGRYGSGLSNPVFLKPPDGKEWKMHQTKHDNEIWFQEGWKEFASFYSLDEGHLVLFKYEGTCQFDVHIFDKSALEIDYPSSSKNNLSDDTLEILDEMPPNQKATHKTPLSSSRPCKKMRSLQNLPVAFKTNPGQCQGTEFQKSTNAELKLCKQEPEDDGESGIFTKSTACLNSEQRRKKATTTVEKIRALISASSFKSENPFFKVMPIKFAKRHLKKECGVVQLEVLDGRTWPARYKIPIIGVGWEKFVMDNGLNVGHVCVFEMIGRTFKVHIFRDDEEGNLNVIPFKDEQISSLQQTPLEEASSFKSEHPHFMVKMTHAYIFRGSNLHVPTKFARTHFDKSTKSAKLVVKDVAWPIGCIFRRDSHGCQLHEFSSRGWKQFRADNDLKVGDVCVFELIPETEFKLTFQVTIFGATKHPIQSSNSA 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0434 456 CDD B3_DNA 342 443 IPR003340 GO:0003677
Prci3g0434 456 PANTHER B3 DOMAIN-CONTAINING 225 438 - -
Prci3g0434 456 CDD B3_DNA 233 306 IPR003340 GO:0003677
Prci3g0434 456 SMART B3_2 13 103 IPR003340 GO:0003677
Prci3g0434 456 SMART B3_2 233 308 IPR003340 GO:0003677
Prci3g0434 456 SMART B3_2 344 446 IPR003340 GO:0003677
Prci3g0434 456 Pfam B3 DNA binding domain 13 102 IPR003340 GO:0003677
Prci3g0434 456 Pfam B3 DNA binding domain 235 306 IPR003340 GO:0003677
Prci3g0434 456 Pfam B3 DNA binding domain 344 440 IPR003340 GO:0003677
Prci3g0434 456 SUPERFAMILY DNA-binding pseudobarrel domain 8 110 IPR015300 -
Prci3g0434 456 SUPERFAMILY DNA-binding pseudobarrel domain 337 444 IPR015300 -
Prci3g0434 456 SUPERFAMILY DNA-binding pseudobarrel domain 229 307 IPR015300 -
Prci3g0434 456 ProSiteProfiles B3 DNA-binding domain profile. 236 308 IPR003340 GO:0003677
Prci3g0434 456 ProSiteProfiles B3 DNA-binding domain profile. 344 446 IPR003340 GO:0003677
Prci3g0434 456 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Prci3g0434 456 Gene3D - 212 309 IPR015300 -
Prci3g0434 456 Gene3D - 324 447 IPR015300 -
Prci3g0434 456 Gene3D - 7 104 IPR015300 -
Prci3g0434 456 CDD B3_DNA 12 101 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0434 Prci-Chr3 5507914 5512658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0434 327 443 B3 DNA Binding Superfamily AT3G18990 29.060 6.75e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci3g0434 B3 5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0434 - - pcin:129304822 934.48