Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0400 ATGAAGAGAATAACTGCGAGCGATGCCCATGCTGGTGAATCGTATATTGGCTTACAAACTATGGATGCGTTAAACTATTTGAGAGCAGTGAGAGAAGCATTTGACAGCAAAAGGGGAAAATATGATCTGTTCTTAGAAATCTTCAGAGATTTCAAGGCTCAAAGGATTAACGTTGGAGATTTCTCAGCAAAGATGAAGGAAGTATTGGAGGGGCATGAGTTTTTGATTTTGGGATTAAACACCTTCTTGCCCAATGGATATAAGATCCCTCCTTCTTTTGAACAACGTCTCAATCGGCCTAATAAGGTTGACAAATCTGAGATTCATGTTCAAAAGAAGCCAAGGAAGAAGAAAACTAAAGGCGATGGAAAATCATCAGTTCAAGAAATCGATCTCGGCAAATGTGAACGTTATGATTTCAGCTACGTGCGTTTGCCTAAGCATTATCAGAGTCCTATAGATGGTCATATGAGATCTGAGCTTGATGCTTCAGTGTTAAACGATCGCTACGTATTGAATCCTCAAGGCCCTCAGGATTATTCGAAATCCAAGAGAATGTTCAATAAGTATCAGCAAGCACTGTTCAAATTTGAAGATGAGCAGTTTGAAGTGGACATGTTATTAGAGTCTCTGTGGTCAGCCTCTGAACGTGTTAAGGAAGTGAATAAGAACATACTTGAGAATAAGATCAACGTGAAGGCGGGTCCAATTTGTGTTGAAGAACACTTTAGGGTTTCACATTTGAGGATCATGGAACGTATATTTGGTGAGCATGGTCTTGACGCTATAGAGGAATTACGCAAGAATCCAACTGTTGCTTTGCCATTGATGCAAAAGAATCTTGAAGAACAACATACGAAGTTGAAGCAATGTCGTGAACGACTCAACATGGCTTGGGCTCAAGATTATGCTGACAATCATGCCAAATCACTTCTTTAA 939 0.3983 MKRITASDAHAGESYIGLQTMDALNYLRAVREAFDSKRGKYDLFLEIFRDFKAQRINVGDFSAKMKEVLEGHEFLILGLNTFLPNGYKIPPSFEQRLNRPNKVDKSEIHVQKKPRKKKTKGDGKSSVQEIDLGKCERYDFSYVRLPKHYQSPIDGHMRSELDASVLNDRYVLNPQGPQDYSKSKRMFNKYQQALFKFEDEQFEVDMLLESLWSASERVKEVNKNILENKINVKAGPICVEEHFRVSHLRIMERIFGEHGLDAIEELRKNPTVALPLMQKNLEEQHTKLKQCRERLNMAWAQDYADNHAKSLL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0400 312 Gene3D Paired amphipathic helix 22 84 IPR036600 GO:0006355
Prci3g0400 312 SUPERFAMILY PAH2 domain 19 87 IPR036600 GO:0006355
Prci3g0400 312 Pfam Paired amphipathic helix repeat 40 83 IPR003822 GO:0006355
Prci3g0400 312 PANTHER SIN3B-RELATED 18 105 IPR039774 GO:0003714
Prci3g0400 312 ProSiteProfiles PAH domain profile. 16 86 IPR003822 GO:0006355
Prci3g0400 312 SMART hdac_interact2seq4b 134 235 IPR013194 -
Prci3g0400 312 FunFam Paired amphipathic helix protein Sin3 22 84 - -
Prci3g0400 312 MobiDBLite consensus disorder prediction 93 126 - -
Prci3g0400 312 Pfam Sin3 family co-repressor 137 228 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0400 Prci-Chr3 5151081 5152917 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci3g0400 11 89 WRKY Transcription Factor Family AT4G12020 41.772 1.39e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Prci3g0400 Sin3_corepress 4.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0400 K11644 - pcin:129304626 618.616