Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci3g0330 ATGGAGGATGCTGAAGGAGTCCTCAGCTTTGATTTTGAAGGCGGTCTCGACACTGCTCCCGCCAACCCAGCTGCGCCATCCGGACCTCTTGCCCCATCCGATTCTCCCGCTGTTGCCACCGCCGCAGCTAATGGTGTTACCCCCGGTGCTGCCGACCCTGCTACAAACAATATTCCTGGCCGCCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTTCGTGGACTCTGCATGAAGGGCGATGCCTGCGGCTTCTTACACCAGTATGACAAAGCGCGGATGCCCGTTTGCCGGTTTTTTAGATTATATGGGGAGTGTCGGGAGCAGGACTGCGTGTATAAGCACACAAACGAAGATATCAAGGAGTGTAACATGTACAAGTGGGGATTTTGCCCCAATGGTCCTGACTGCCGGTATAGGCATGCTAAAGTTCCTGGACCTCCCCCTCCTGTTGAGGAAGTGCTTCAAAAGATTCAGCATTTATATTCTTACAATTATGCAACCTCTAACAAATTTTTCCAACAAAGAGGTTCTGGCTATTCTCAACAAGCTGAAAAATCTCAGTTTCCACAAGGTCCTAATTCTGCAAACCAAGCTGTACCTGGAAAACCATTAGCAGCAGAGTCAGGCAATGCCCAGCAGCAGCAGCAACAGCCAATACAACAGTCTCAGCAGCAGGGTGGCCAGAGTCAAATACAAAACACTACTAATGGCCAGCCCAGTCAGGCAAACAGAACAGCAACACCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAACCGTGAAAATTTGGAGCTATCTGTTCAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAGGCTAAACTGAATGAAGCCTTTGACTCGGTGGAAAATGTGATATTGATTTTCTCAGTCAACAGAACTCGACATTTTCAGGGTTGTGCAAAGATGACATCCAGAATAGGGGGCTCTGCTACTGGGGGAAACTGGAAATATGCACATGGAACTGCACATTATGGACGTAACTTCTCCGTCAAATGGTTAAAGTTGTGTGAATTGTCATTTCACAAGACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTAAAGATAAGTAGAGATTGTCAAGAACTGGAGCCTTCTATTGGTGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAACTTATGGCTGCCTCACTTGCAGCAGAGTCTAAGAGAGAGGAAGAGAAGGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATCGTTCCATTTGAGGACAATGAAGAGGAGGAAGAGGAGGAAAGTGATGAAGAGGAGGAAAGCTTTGGCCCAGGTGTTGGGCCAGCTTCTCAAGGCCGAGGTAGGGGCCGAGGTATGATGTGGCCTCCCCACATGCCTATGGGGCGTGGAGCCAGGCCTCTACCAGGAATGCAGGGTTTTCCCCCAGTAATGATGGGAGATGGATTATCCTATGGGCCAGTTACCCCTGATGGCTTTGGTATGCCAGATCTATTTGGTATGGGCCCTCGTGGTTTTGGTCCCTATGGTCCTAGGTTCTCTAATGATTTTGCAGGCCCCCCAGCAGCAATGATGTTTCGTGGGCGACCCTCACAACCCGGGATGTTTCCAGGTGGTGGGTTTGGGATGATGATGAATCCAGCACGTGCTCCATTTATGGGCGGAATGGGGGCTGCAGGTGCAAATCCACCAAGGACCGGTAGACCAGGTGGCATGCCTCCAATGTTCATGCCACCACCACAACATCAGAACACTAACCGAGTTGCTAGGAGAGACCAAAGAACAAATGATCGGAATGATAGGTATGGTCCAGGGCTAGAGAGCAAGGGTCCAGACATGATGAGTCAATCAGGTGGACTTGAAGACGACATGCAATATCAGCAAGGATTCAACTCAGCCCAGGAGGATCAGTATGCTGTTGGAAACCACCTCAGAAATGAGGAGAGTGAAAGTGAAGATGAGGCGCCTCGAAGGTCTAGACATGGCGAGGGGAAAAAGAGAAAGGGCGAAGTCTAG 2055 0.4925 MEDAEGVLSFDFEGGLDTAPANPAAPSGPLAPSDSPAVATAAANGVTPGAADPATNNIPGRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKWGFCPNGPDCRYRHAKVPGPPPPVEEVLQKIQHLYSYNYATSNKFFQQRGSGYSQQAEKSQFPQGPNSANQAVPGKPLAAESGNAQQQQQQPIQQSQQQGGQSQIQNTTNGQPSQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSATGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAASLAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGPGVGPASQGRGRGRGMMWPPHMPMGRGARPLPGMQGFPPVMMGDGLSYGPVTPDGFGMPDLFGMGPRGFGPYGPRFSNDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPARAPFMGGMGAAGANPPRTGRPGGMPPMFMPPPQHQNTNRVARRDQRTNDRNDRYGPGLESKGPDMMSQSGGLEDDMQYQQGFNSAQEDQYAVGNHLRNEESESEDEAPRRSRHGEGKKRKGEV 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci3g0330 684 Pfam YT521-B-like domain 255 389 IPR007275 GO:0003723
Prci3g0330 684 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Prci3g0330 684 MobiDBLite consensus disorder prediction 177 249 - -
Prci3g0330 684 SUPERFAMILY CCCH zinc finger 65 88 IPR036855 GO:0046872
Prci3g0330 684 MobiDBLite consensus disorder prediction 654 684 - -
Prci3g0330 684 Gene3D ph1033 like domains 233 393 - -
Prci3g0330 684 MobiDBLite consensus disorder prediction 570 684 - -
Prci3g0330 684 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 28 676 IPR045168 -
Prci3g0330 684 MobiDBLite consensus disorder prediction 18 37 - -
Prci3g0330 684 MobiDBLite consensus disorder prediction 177 198 - -
Prci3g0330 684 MobiDBLite consensus disorder prediction 404 418 - -
Prci3g0330 684 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 59 119 - -
Prci3g0330 684 MobiDBLite consensus disorder prediction 429 448 - -
Prci3g0330 684 MobiDBLite consensus disorder prediction 208 249 - -
Prci3g0330 684 MobiDBLite consensus disorder prediction 600 618 - -
Prci3g0330 684 Gene3D - 57 120 - -
Prci3g0330 684 ProSiteProfiles YTH domain profile. 255 390 IPR007275 GO:0003723
Prci3g0330 684 ProSiteProfiles Zinc finger C3H1-type profile. 63 90 IPR000571 GO:0046872
Prci3g0330 684 CDD YTH 256 390 IPR007275 GO:0003723
Prci3g0330 684 SMART c3hfinal6 63 89 IPR000571 GO:0046872
Prci3g0330 684 SMART c3hfinal6 91 117 IPR000571 GO:0046872
Prci3g0330 684 SMART c3hfinal6 119 143 IPR000571 GO:0046872
Prci3g0330 684 MobiDBLite consensus disorder prediction 633 652 - -
Prci3g0330 684 MobiDBLite consensus disorder prediction 402 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci3g0330 Prci-Chr3 4190791 4214221 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci3g0330 YTH 1.2e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci3g0330 K14404 - gmx:100802826 1040.02